Analysis of interatomic Contacts of Structural Units in PDB entry:
8F2R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F2R entry

There are 10 chains in PDB entry 8F2R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 187
B	MET 1	LYS 199
C	MET 1	LEU 195
D	MET 1	GLY 199
E	GLY 20	ASP 224
F	LEU 9	VAL 85
G	MET 1	CYS 200
H	GLU 5	LYS 183
I	MET 1	LYS 198
J	ALA 5	THR 202

There are 80 helices in PDB entry 8F2R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	6	Right-handed 310
Helix 2	AA2	A	8	24	Right-handed alpha
Helix 3	AA3	A	31	40	Right-handed alpha
Helix 4	AA4	A	44	64	Right-handed alpha
Helix 5	AA5	A	68	82	Right-handed alpha
Helix 6	AA6	A	87	113	Right-handed alpha
Helix 7	AA7	A	164	187	Right-handed alpha
Helix 8	AA8	B	6	14	Right-handed alpha
Helix 9	AA9	B	15	19	Right-handed 310
Helix 10	AB1	B	20	38	Right-handed alpha
Helix 11	AB2	B	40	52	Right-handed alpha
Helix 12	AB3	B	54	76	Right-handed alpha
Helix 13	AB4	B	78	90	Right-handed alpha
Helix 14	AB5	B	92	105	Right-handed alpha
Helix 15	AB6	B	106	115	Right-handed alpha
Helix 16	AB7	B	116	118	Right-handed 310
Helix 17	AB8	B	168	188	Right-handed alpha
Helix 18	AB9	B	188	198	Right-handed alpha
Helix 19	AC1	C	4	15	Right-handed alpha
Helix 20	AC2	C	21	38	Right-handed alpha
Helix 21	AC3	C	42	47	Right-handed 310
Helix 22	AC4	C	48	53	Right-handed alpha
Helix 23	AC5	C	55	76	Right-handed alpha
Helix 24	AC6	C	79	90	Right-handed alpha
Helix 25	AC7	C	93	117	Right-handed alpha
Helix 26	AC8	C	171	195	Right-handed alpha
Helix 27	AC9	D	3	7	Right-handed 310
Helix 28	AD1	D	12	24	Right-handed alpha
Helix 29	AD2	D	26	42	Right-handed alpha
Helix 30	AD3	D	47	54	Right-handed alpha
Helix 31	AD4	D	55	59	Right-handed 310
Helix 32	AD5	D	61	83	Right-handed alpha
Helix 33	AD6	D	85	97	Right-handed alpha
Helix 34	AD7	D	99	124	Right-handed alpha
Helix 35	AD8	D	178	199	Right-handed alpha
Helix 36	AD9	E	30	40	Right-handed alpha
Helix 37	AE1	E	41	43	Right-handed 310
Helix 38	AE2	E	44	60	Right-handed alpha
Helix 39	AE3	E	64	76	Right-handed alpha
Helix 40	AE4	E	78	99	Right-handed alpha
Helix 41	AE5	E	105	116	Right-handed alpha
Helix 42	AE6	E	119	132	Right-handed alpha
Helix 43	AE7	E	133	143	Right-handed alpha
Helix 44	AE8	E	144	147	Right-handed 310
Helix 45	AE9	E	193	222	Right-handed alpha
Helix 46	AF1	F	11	16	Right-handed 310
Helix 47	AF2	F	65	85	Right-handed alpha
Helix 48	AF3	G	12	25	Right-handed alpha
Helix 49	AF4	G	26	43	Right-handed alpha
Helix 50	AF5	G	46	62	Right-handed alpha
Helix 51	AF6	G	64	86	Right-handed alpha
Helix 52	AF7	G	88	100	Right-handed alpha
Helix 53	AF8	G	102	115	Right-handed alpha
Helix 54	AF9	G	116	126	Right-handed alpha
Helix 55	AG1	G	179	198	Right-handed alpha
Helix 56	AG2	H	7	15	Right-handed 310
Helix 57	AG3	H	16	18	Right-handed 310
Helix 58	AG4	H	19	32	Right-handed alpha
Helix 59	AG5	H	38	42	Right-handed 310
Helix 60	AG6	H	47	68	Right-handed alpha
Helix 61	AG7	H	71	78	Right-handed alpha
Helix 62	AG8	H	83	96	Right-handed alpha
Helix 63	AG9	H	97	111	Right-handed alpha
Helix 64	AH1	H	161	183	Right-handed alpha
Helix 65	AH2	I	5	13	Right-handed alpha
Helix 66	AH3	I	14	18	Right-handed 310
Helix 67	AH4	I	20	34	Right-handed alpha
Helix 68	AH5	I	35	51	Right-handed alpha
Helix 69	AH6	I	53	75	Right-handed alpha
Helix 70	AH7	I	78	83	Right-handed alpha
Helix 71	AH8	I	91	117	Right-handed alpha
Helix 72	AH9	I	156	161	Right-handed alpha
Helix 73	AI1	I	174	198	Right-handed alpha
Helix 74	AI2	J	12	25	Right-handed alpha
Helix 75	AI3	J	29	41	Right-handed alpha
Helix 76	AI4	J	50	62	Right-handed alpha
Helix 77	AI5	J	64	85	Right-handed alpha
Helix 78	AI6	J	88	100	Right-handed alpha
Helix 79	AI7	J	102	126	Right-handed alpha
Helix 80	AI8	J	181	201	Right-handed alpha

There are 5 sheets in PDB entry 8F2R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	163	first strand
Strand 2	A	141	150	anti-parallel
Strand 3	A	118	132	anti-parallel
Strand 4	I	122	136	anti-parallel
Strand 5	I	144	154	anti-parallel
Strand 6	I	167	173	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	167	first strand
Strand 2	B	145	155	anti-parallel
Strand 3	B	123	137	anti-parallel
Strand 4	H	116	130	anti-parallel
Strand 5	H	138	149	anti-parallel
Strand 6	H	152	160	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	170	first strand
Strand 2	C	146	156	anti-parallel
Strand 3	C	124	138	anti-parallel
Strand 4	J	132	147	anti-parallel
Strand 5	J	156	166	anti-parallel
Strand 6	J	171	179	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	177	first strand
Strand 2	D	152	162	anti-parallel
Strand 3	D	130	144	anti-parallel
Strand 4	F	18	32	anti-parallel
Strand 5	F	41	50	anti-parallel
Strand 6	F	57	64	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	192	first strand
Strand 2	E	174	182	anti-parallel
Strand 3	E	152	161	anti-parallel
Strand 4	G	134	147	anti-parallel
Strand 5	G	156	166	anti-parallel
Strand 6	G	169	178	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F2R

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F2R