Analysis of interatomic Contacts of Structural Units in PDB entry:
8F2S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F2S entry

There are 5 chains in PDB entry 8F2S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	LEU 433
B	ASN 2	CYS 500
C	SER 1	ALA 469
D	SER 1	PHE 426
E	GLU 1	PRO 489

There are 56 helices in PDB entry 8F2S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	12	Right-handed alpha
Helix 2	AA2	A	63	66	Right-handed 310
Helix 3	AA3	A	68	73	Right-handed 310
Helix 4	AA4	A	83	85	Right-handed 310
Helix 5	AA5	A	212	218	Right-handed alpha
Helix 6	AA6	A	218	231	Right-handed alpha
Helix 7	AA7	A	232	235	Right-handed 310
Helix 8	AA8	A	241	264	Right-handed alpha
Helix 9	AA9	A	272	300	Right-handed alpha
Helix 10	AB1	A	309	317	Right-handed alpha
Helix 11	AB2	A	319	324	Right-handed 310
Helix 12	AB3	A	371	433	Right-handed alpha
Helix 13	AB4	B	3	13	Right-handed alpha
Helix 14	AB5	B	65	68	Right-handed 310
Helix 15	AB6	B	226	232	Right-handed alpha
Helix 16	AB7	B	232	242	Right-handed alpha
Helix 17	AB8	B	243	248	Right-handed 310
Helix 18	AB9	B	255	277	Right-handed alpha
Helix 19	AC1	B	286	314	Right-handed alpha
Helix 20	AC2	B	323	332	Right-handed alpha
Helix 21	AC3	B	332	338	Right-handed alpha
Helix 22	AC4	B	417	478	Right-handed alpha
Helix 23	AC5	C	2	12	Right-handed alpha
Helix 24	AC6	C	68	73	Right-handed 310
Helix 25	AC7	C	81	85	Right-handed 310
Helix 26	AC8	C	217	238	Right-handed alpha
Helix 27	AC9	C	242	246	Right-handed 310
Helix 28	AD1	C	247	265	Right-handed alpha
Helix 29	AD2	C	278	306	Right-handed alpha
Helix 30	AD3	C	315	323	Right-handed alpha
Helix 31	AD4	C	325	331	Right-handed alpha
Helix 32	AD5	C	399	460	Right-handed alpha
Helix 33	AD6	D	2	12	Right-handed alpha
Helix 34	AD7	D	63	66	Right-handed 310
Helix 35	AD8	D	68	73	Right-handed 310
Helix 36	AD9	D	83	85	Right-handed 310
Helix 37	AE1	D	211	218	Right-handed alpha
Helix 38	AE2	D	218	230	Right-handed alpha
Helix 39	AE3	D	231	235	Right-handed 310
Helix 40	AE4	D	236	240	Right-handed 310
Helix 41	AE5	D	241	264	Right-handed alpha
Helix 42	AE6	D	272	300	Right-handed alpha
Helix 43	AE7	D	309	318	Right-handed alpha
Helix 44	AE8	D	319	324	Right-handed alpha
Helix 45	AE9	D	371	426	Right-handed alpha
Helix 46	AF1	E	2	13	Right-handed alpha
Helix 47	AF2	E	68	73	Right-handed 310
Helix 48	AF3	E	83	85	Right-handed 310
Helix 49	AF4	E	131	135	Right-handed 310
Helix 50	AF5	E	219	226	Right-handed alpha
Helix 51	AF6	E	226	235	Right-handed alpha
Helix 52	AF7	E	236	243	Right-handed 310
Helix 53	AF8	E	250	271	Right-handed alpha
Helix 54	AF9	E	281	309	Right-handed alpha
Helix 55	AG1	E	318	328	Right-handed alpha
Helix 56	AG2	E	412	472	Right-handed alpha

There are 20 sheets in PDB entry 8F2S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	81	first strand
Strand 2	A	107	111	anti-parallel
Strand 3	A	115	118	anti-parallel
Strand 4	A	49	61	anti-parallel
Strand 5	A	121	127	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	81	first strand
Strand 2	A	107	111	anti-parallel
Strand 3	A	115	118	anti-parallel
Strand 4	A	49	61	anti-parallel
Strand 5	A	29	44	anti-parallel
Strand 6	A	156	160	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	139	148	anti-parallel
Strand 3	A	193	209	anti-parallel
Strand 4	A	176	190	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	110	112	anti-parallel
Strand 3	B	117	120	anti-parallel
Strand 4	B	52	63	anti-parallel
Strand 5	B	123	128	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	110	112	anti-parallel
Strand 3	B	117	120	anti-parallel
Strand 4	B	52	63	anti-parallel
Strand 5	B	31	44	anti-parallel
Strand 6	B	158	162	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	141	150	anti-parallel
Strand 3	B	215	223	anti-parallel
Strand 4	B	190	194	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	141	150	anti-parallel
Strand 3	B	215	223	anti-parallel
Strand 4	B	197	199	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	166	first strand
Strand 2	B	171	173	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	80	first strand
Strand 2	C	108	111	anti-parallel
Strand 3	C	115	118	anti-parallel
Strand 4	C	49	61	anti-parallel
Strand 5	C	121	126	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	80	first strand
Strand 2	C	108	111	anti-parallel
Strand 3	C	115	118	anti-parallel
Strand 4	C	49	61	anti-parallel
Strand 5	C	29	44	anti-parallel
Strand 6	C	156	162	parallel
Strand 7	C	169	170	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	139	148	anti-parallel
Strand 3	C	206	215	anti-parallel
Strand 4	C	186	190	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	139	148	anti-parallel
Strand 3	C	206	215	anti-parallel
Strand 4	C	193	196	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	81	first strand
Strand 2	D	107	111	anti-parallel
Strand 3	D	115	118	anti-parallel
Strand 4	D	49	61	anti-parallel
Strand 5	D	121	127	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	81	first strand
Strand 2	D	107	111	anti-parallel
Strand 3	D	115	118	anti-parallel
Strand 4	D	49	61	anti-parallel
Strand 5	D	29	44	anti-parallel
Strand 6	D	156	160	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	92	first strand
Strand 2	D	139	148	anti-parallel
Strand 3	D	193	209	anti-parallel
Strand 4	D	176	190	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	81	first strand
Strand 2	E	107	111	anti-parallel
Strand 3	E	115	118	anti-parallel
Strand 4	E	49	61	anti-parallel
Strand 5	E	121	127	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	81	first strand
Strand 2	E	107	111	anti-parallel
Strand 3	E	115	118	anti-parallel
Strand 4	E	49	61	anti-parallel
Strand 5	E	29	44	anti-parallel
Strand 6	E	156	160	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	92	first strand
Strand 2	E	139	148	anti-parallel
Strand 3	E	207	217	anti-parallel
Strand 4	E	184	188	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	92	first strand
Strand 2	E	139	148	anti-parallel
Strand 3	E	207	217	anti-parallel
Strand 4	E	191	195	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	163	first strand
Strand 2	E	166	167	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F2S

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F2S