Analysis of interatomic Contacts of Structural Units in PDB entry:
8F2U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F2U entry

There are 12 chains in PDB entry 8F2U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 187
B	MET 1	LYS 199
C	MET 1	LEU 195
D	MET 1	GLY 199
E	GLY 20	ASP 224
F	LEU 9	VAL 85
G	MET 1	CYS 200
H	GLU 5	LYS 183
I	MET 1	LYS 198
J	ALA 5	THR 202
N	GLN 23	PRO 306
T	GLY 121	THR 294

There are106 helices in PDB entry 8F2U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	24	Right-handed alpha
Helix 2	AA2	A	32	40	Right-handed alpha
Helix 3	AA3	A	49	63	Right-handed alpha
Helix 4	AA4	A	68	81	Right-handed alpha
Helix 5	AA5	A	87	101	Right-handed alpha
Helix 6	AA6	A	101	112	Right-handed alpha
Helix 7	AA7	A	164	185	Right-handed alpha
Helix 8	AA8	B	6	12	Right-handed alpha
Helix 9	AA9	B	13	15	Right-handed 310
Helix 10	AB1	B	20	37	Right-handed alpha
Helix 11	AB2	B	41	52	Right-handed alpha
Helix 12	AB3	B	54	74	Right-handed alpha
Helix 13	AB4	B	78	87	Right-handed alpha
Helix 14	AB5	B	88	90	Right-handed 310
Helix 15	AB6	B	92	106	Right-handed alpha
Helix 16	AB7	B	106	115	Right-handed alpha
Helix 17	AB8	B	116	118	Right-handed 310
Helix 18	AB9	B	168	183	Right-handed alpha
Helix 19	AC1	B	184	187	Right-handed 310
Helix 20	AC2	B	188	198	Right-handed alpha
Helix 21	AC3	C	4	16	Right-handed alpha
Helix 22	AC4	C	21	38	Right-handed alpha
Helix 23	AC5	C	42	47	Right-handed 310
Helix 24	AC6	C	48	52	Right-handed 310
Helix 25	AC7	C	55	76	Right-handed alpha
Helix 26	AC8	C	79	90	Right-handed alpha
Helix 27	AC9	C	95	107	Right-handed alpha
Helix 28	AD1	C	107	116	Right-handed alpha
Helix 29	AD2	C	171	195	Right-handed alpha
Helix 30	AD3	D	12	24	Right-handed alpha
Helix 31	AD4	D	26	43	Right-handed alpha
Helix 32	AD5	D	47	55	Right-handed alpha
Helix 33	AD6	D	56	59	Right-handed 310
Helix 34	AD7	D	61	82	Right-handed alpha
Helix 35	AD8	D	85	96	Right-handed alpha
Helix 36	AD9	D	99	111	Right-handed alpha
Helix 37	AE1	D	113	124	Right-handed alpha
Helix 38	AE2	D	177	196	Right-handed alpha
Helix 39	AE3	E	30	40	Right-handed alpha
Helix 40	AE4	E	44	60	Right-handed alpha
Helix 41	AE5	E	64	76	Right-handed alpha
Helix 42	AE6	E	78	99	Right-handed alpha
Helix 43	AE7	E	100	104	Right-handed 310
Helix 44	AE8	E	105	113	Right-handed alpha
Helix 45	AE9	E	122	132	Right-handed alpha
Helix 46	AF1	E	134	144	Right-handed alpha
Helix 47	AF2	E	193	221	Right-handed alpha
Helix 48	AF3	F	64	85	Right-handed alpha
Helix 49	AF4	G	12	17	Right-handed alpha
Helix 50	AF5	G	18	24	Right-handed 310
Helix 51	AF6	G	26	43	Right-handed alpha
Helix 52	AF7	G	47	62	Right-handed alpha
Helix 53	AF8	G	64	76	Right-handed alpha
Helix 54	AF9	G	76	86	Right-handed alpha
Helix 55	AG1	G	88	100	Right-handed alpha
Helix 56	AG2	G	102	127	Right-handed alpha
Helix 57	AG3	G	178	197	Right-handed alpha
Helix 58	AG4	H	7	13	Right-handed 310
Helix 59	AG5	H	16	18	Right-handed 310
Helix 60	AG6	H	19	33	Right-handed alpha
Helix 61	AG7	H	38	46	Right-handed 310
Helix 62	AG8	H	47	69	Right-handed alpha
Helix 63	AG9	H	71	79	Right-handed alpha
Helix 64	AH1	H	85	97	Right-handed alpha
Helix 65	AH2	H	97	110	Right-handed alpha
Helix 66	AH3	H	161	183	Right-handed alpha
Helix 67	AH4	I	5	12	Right-handed alpha
Helix 68	AH5	I	14	18	Right-handed 310
Helix 69	AH6	I	20	32	Right-handed alpha
Helix 70	AH7	I	35	51	Right-handed alpha
Helix 71	AH8	I	53	75	Right-handed alpha
Helix 72	AH9	I	78	84	Right-handed alpha
Helix 73	AI1	I	91	105	Right-handed alpha
Helix 74	AI2	I	105	114	Right-handed alpha
Helix 75	AI3	I	156	161	Right-handed alpha
Helix 76	AI4	I	174	198	Right-handed alpha
Helix 77	AI5	J	12	23	Right-handed alpha
Helix 78	AI6	J	29	39	Right-handed alpha
Helix 79	AI7	J	50	62	Right-handed alpha
Helix 80	AI8	J	64	86	Right-handed alpha
Helix 81	AI9	J	88	97	Right-handed alpha
Helix 82	AJ1	J	98	100	Right-handed 310
Helix 83	AJ2	J	102	126	Right-handed alpha
Helix 84	AJ3	J	180	199	Right-handed alpha
Helix 85	AJ4	J	200	202	Right-handed 310
Helix 86	AJ5	N	24	36	Right-handed alpha
Helix 87	AJ6	N	39	44	Right-handed 310
Helix 88	AJ7	N	48	64	Right-handed alpha
Helix 89	AJ8	N	79	94	Right-handed alpha
Helix 90	AJ9	N	95	98	Right-handed 310
Helix 91	AK1	N	104	110	Right-handed alpha
Helix 92	AK2	N	112	135	Right-handed alpha
Helix 93	AK3	N	136	150	Right-handed alpha
Helix 94	AK4	N	152	176	Right-handed alpha
Helix 95	AK5	N	195	204	Right-handed alpha
Helix 96	AK6	N	271	278	Right-handed alpha
Helix 97	AK7	N	278	301	Right-handed alpha
Helix 98	AK8	T	122	140	Right-handed alpha
Helix 99	AK9	T	144	148	Right-handed 310
Helix 100	AL1	T	149	156	Right-handed alpha
Helix 101	AL2	T	178	185	Right-handed alpha
Helix 102	AL3	T	191	195	Right-handed 310
Helix 103	AL4	T	198	219	Right-handed alpha
Helix 104	AL5	T	230	235	Right-handed 310
Helix 105	AL6	T	241	258	Right-handed alpha
Helix 106	AL7	T	274	280	Right-handed alpha

There are 5 sheets in PDB entry 8F2U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	163	first strand
Strand 2	A	141	150	anti-parallel
Strand 3	A	117	132	anti-parallel
Strand 4	F	59	63	parallel
Strand 5	F	40	50	anti-parallel
Strand 6	F	18	32	anti-parallel
Strand 7	D	131	144	anti-parallel
Strand 8	D	152	161	anti-parallel
Strand 9	D	170	176	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	163	first strand
Strand 2	A	141	150	anti-parallel
Strand 3	A	117	132	anti-parallel
Strand 4	I	122	136	anti-parallel
Strand 5	I	145	154	anti-parallel
Strand 6	I	166	173	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	167	first strand
Strand 2	B	145	156	anti-parallel
Strand 3	B	123	137	anti-parallel
Strand 4	H	115	130	anti-parallel
Strand 5	H	138	149	anti-parallel
Strand 6	H	152	160	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	170	first strand
Strand 2	C	146	156	anti-parallel
Strand 3	C	124	138	anti-parallel
Strand 4	J	132	147	anti-parallel
Strand 5	J	155	166	anti-parallel
Strand 6	J	171	179	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	192	first strand
Strand 2	E	173	182	anti-parallel
Strand 3	E	152	165	anti-parallel
Strand 4	G	133	147	anti-parallel
Strand 5	G	156	165	anti-parallel
Strand 6	G	171	177	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F2U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F2U