Analysis of interatomic Contacts of Structural Units in PDB entry:
8F3E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F3E entry

There are 3 chains in PDB entry 8F3E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 1031
B	MET 1	LEU 1032
C	MET 1	LEU 1032

There are111 helices in PDB entry 8F3E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	7	Right-handed alpha
Helix 2	AA2	A	8	30	Right-handed alpha
Helix 3	AA3	A	53	61	Right-handed alpha
Helix 4	AA4	A	61	69	Right-handed alpha
Helix 5	AA5	A	99	115	Right-handed alpha
Helix 6	AA6	A	119	126	Right-handed alpha
Helix 7	AA7	A	150	162	Right-handed alpha
Helix 8	AA8	A	162	168	Right-handed alpha
Helix 9	AA9	A	189	196	Right-handed alpha
Helix 10	AB1	A	199	211	Right-handed alpha
Helix 11	AB2	A	242	248	Right-handed alpha
Helix 12	AB3	A	262	265	Right-handed alpha
Helix 13	AB4	A	298	315	Right-handed alpha
Helix 14	AB5	A	329	359	Right-handed alpha
Helix 15	AB6	A	361	386	Right-handed alpha
Helix 16	AB7	A	391	424	Right-handed alpha
Helix 17	AB8	A	426	454	Right-handed alpha
Helix 18	AB9	A	455	459	Right-handed 310
Helix 19	AC1	A	460	496	Right-handed alpha
Helix 20	AC2	A	500	507	Right-handed alpha
Helix 21	AC3	A	510	536	Right-handed alpha
Helix 22	AC4	A	536	558	Right-handed alpha
Helix 23	AC5	A	582	600	Right-handed alpha
Helix 24	AC6	A	642	655	Right-handed alpha
Helix 25	AC7	A	690	708	Right-handed alpha
Helix 26	AC8	A	730	738	Right-handed alpha
Helix 27	AC9	A	740	752	Right-handed alpha
Helix 28	AD1	A	775	778	Right-handed 310
Helix 29	AD2	A	780	786	Right-handed 310
Helix 30	AD3	A	834	849	Right-handed alpha
Helix 31	AD4	A	859	867	Right-handed alpha
Helix 32	AD5	A	869	891	Right-handed alpha
Helix 33	AD6	A	894	901	Right-handed alpha
Helix 34	AD7	A	902	917	Right-handed alpha
Helix 35	AD8	A	922	954	Right-handed alpha
Helix 36	AD9	A	957	988	Right-handed alpha
Helix 37	AE1	A	993	1030	Right-handed alpha
Helix 38	AE2	B	2	7	Right-handed alpha
Helix 39	AE3	B	8	29	Right-handed alpha
Helix 40	AE4	B	53	61	Right-handed alpha
Helix 41	AE5	B	61	70	Right-handed alpha
Helix 42	AE6	B	99	112	Right-handed alpha
Helix 43	AE7	B	119	126	Right-handed alpha
Helix 44	AE8	B	150	162	Right-handed alpha
Helix 45	AE9	B	162	168	Right-handed alpha
Helix 46	AF1	B	189	196	Right-handed alpha
Helix 47	AF2	B	199	211	Right-handed alpha
Helix 48	AF3	B	242	248	Right-handed alpha
Helix 49	AF4	B	261	265	Right-handed alpha
Helix 50	AF5	B	298	315	Right-handed alpha
Helix 51	AF6	B	329	359	Right-handed alpha
Helix 52	AF7	B	361	386	Right-handed alpha
Helix 53	AF8	B	391	424	Right-handed alpha
Helix 54	AF9	B	426	452	Right-handed alpha
Helix 55	AG1	B	454	459	Right-handed 310
Helix 56	AG2	B	460	496	Right-handed alpha
Helix 57	AG3	B	501	506	Right-handed alpha
Helix 58	AG4	B	510	535	Right-handed alpha
Helix 59	AG5	B	537	557	Right-handed alpha
Helix 60	AG6	B	582	600	Right-handed alpha
Helix 61	AG7	B	642	655	Right-handed alpha
Helix 62	AG8	B	690	708	Right-handed alpha
Helix 63	AG9	B	730	738	Right-handed alpha
Helix 64	AH1	B	740	753	Right-handed alpha
Helix 65	AH2	B	775	778	Right-handed 310
Helix 66	AH3	B	780	786	Right-handed 310
Helix 67	AH4	B	834	847	Right-handed alpha
Helix 68	AH5	B	859	891	Right-handed alpha
Helix 69	AH6	B	894	901	Right-handed alpha
Helix 70	AH7	B	902	918	Right-handed alpha
Helix 71	AH8	B	922	954	Right-handed alpha
Helix 72	AH9	B	956	968	Right-handed alpha
Helix 73	AI1	B	968	988	Right-handed alpha
Helix 74	AI2	B	993	1014	Right-handed alpha
Helix 75	AI3	B	1014	1030	Right-handed alpha
Helix 76	AI4	C	2	8	Right-handed alpha
Helix 77	AI5	C	8	28	Right-handed alpha
Helix 78	AI6	C	53	61	Right-handed alpha
Helix 79	AI7	C	61	69	Right-handed alpha
Helix 80	AI8	C	99	115	Right-handed alpha
Helix 81	AI9	C	119	126	Right-handed alpha
Helix 82	AJ1	C	150	162	Right-handed alpha
Helix 83	AJ2	C	162	168	Right-handed alpha
Helix 84	AJ3	C	189	196	Right-handed alpha
Helix 85	AJ4	C	199	211	Right-handed alpha
Helix 86	AJ5	C	242	248	Right-handed alpha
Helix 87	AJ6	C	298	314	Right-handed alpha
Helix 88	AJ7	C	315	317	Right-handed 310
Helix 89	AJ8	C	329	360	Right-handed alpha
Helix 90	AJ9	C	361	387	Right-handed alpha
Helix 91	AK1	C	391	423	Right-handed alpha
Helix 92	AK2	C	426	452	Right-handed alpha
Helix 93	AK3	C	454	459	Right-handed 310
Helix 94	AK4	C	460	496	Right-handed alpha
Helix 95	AK5	C	511	534	Right-handed alpha
Helix 96	AK6	C	537	558	Right-handed alpha
Helix 97	AK7	C	582	598	Right-handed alpha
Helix 98	AK8	C	642	655	Right-handed alpha
Helix 99	AK9	C	690	708	Right-handed alpha
Helix 100	AL1	C	730	737	Right-handed alpha
Helix 101	AL2	C	740	752	Right-handed alpha
Helix 102	AL3	C	775	779	Right-handed 310
Helix 103	AL4	C	780	786	Right-handed 310
Helix 104	AL5	C	834	847	Right-handed alpha
Helix 105	AL6	C	859	866	Right-handed alpha
Helix 106	AL7	C	870	891	Right-handed alpha
Helix 107	AL8	C	894	901	Right-handed alpha
Helix 108	AL9	C	902	917	Right-handed alpha
Helix 109	AM1	C	922	953	Right-handed alpha
Helix 110	AM2	C	956	988	Right-handed alpha
Helix 111	AM3	C	993	1030	Right-handed alpha

There are 23 sheets in PDB entry 8F3E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	813	817	anti-parallel
Strand 6	A	820	829	anti-parallel
Strand 7	A	711	716	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	813	817	anti-parallel
Strand 6	A	820	829	anti-parallel
Strand 7	A	678	684	anti-parallel
Strand 8	A	855	857	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	177	first strand
Strand 2	A	284	293	anti-parallel
Strand 3	A	136	144	anti-parallel
Strand 4	A	321	328	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	177	first strand
Strand 2	A	284	293	anti-parallel
Strand 3	A	278	281	anti-parallel
Strand 4	A	605	612	anti-parallel
Strand 5	A	623	630	anti-parallel
Strand 6	A	570	576	anti-parallel
Strand 7	A	663	665	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	272	first strand
Strand 2	A	182	188	anti-parallel
Strand 3	A	765	773	parallel
Strand 4	A	756	762	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	218	first strand
Strand 2	A	233	235	anti-parallel
Strand 3	B	722	729	parallel
Strand 4	B	803	810	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	253	first strand
Strand 2	A	259	261	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	803	810	first strand
Strand 2	A	722	729	anti-parallel
Strand 3	C	232	235	parallel
Strand 4	C	217	219	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	788	790	first strand
Strand 2	A	796	798	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	813	817	anti-parallel
Strand 6	B	820	829	anti-parallel
Strand 7	B	711	716	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	813	817	anti-parallel
Strand 6	B	820	829	anti-parallel
Strand 7	B	680	685	anti-parallel
Strand 8	B	853	854	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	177	first strand
Strand 2	B	287	293	anti-parallel
Strand 3	B	136	144	anti-parallel
Strand 4	B	321	328	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	272	first strand
Strand 2	B	182	188	anti-parallel
Strand 3	B	765	773	parallel
Strand 4	B	755	762	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	218	first strand
Strand 2	B	233	235	anti-parallel
Strand 3	C	722	729	parallel
Strand 4	C	803	810	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	B	278	281	anti-parallel
Strand 3	B	605	612	anti-parallel
Strand 4	B	623	630	anti-parallel
Strand 5	B	570	576	anti-parallel
Strand 6	B	661	665	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	788	790	first strand
Strand 2	B	796	798	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	130	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	75	83	anti-parallel
Strand 5	C	813	817	anti-parallel
Strand 6	C	820	829	anti-parallel
Strand 7	C	711	716	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	130	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	75	83	anti-parallel
Strand 5	C	813	817	anti-parallel
Strand 6	C	820	829	anti-parallel
Strand 7	C	680	685	anti-parallel
Strand 8	C	853	857	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	177	first strand
Strand 2	C	284	293	anti-parallel
Strand 3	C	138	144	anti-parallel
Strand 4	C	321	328	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	177	first strand
Strand 2	C	284	293	anti-parallel
Strand 3	C	278	281	anti-parallel
Strand 4	C	605	612	anti-parallel
Strand 5	C	623	630	anti-parallel
Strand 6	C	570	576	anti-parallel
Strand 7	C	661	665	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	272	first strand
Strand 2	C	182	188	anti-parallel
Strand 3	C	765	773	parallel
Strand 4	C	755	762	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	253	first strand
Strand 2	C	259	261	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	788	790	first strand
Strand 2	C	796	798	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F3E

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F3E