Analysis of interatomic Contacts of Structural Units in PDB entry:
8F48


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F48 entry

There are 2 chains in PDB entry 8F48 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 37GLU 382
B
 GLY 37GLU 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8F48. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 64Right-handed alpha
Helix 2
AA2
A
82 99Right-handed alpha
Helix 3
AA3
A
115 122Right-handed alpha
Helix 4
AA4
A
145 158Right-handed alpha
Helix 5
AA5
A
166 175Right-handed alpha
Helix 6
AA6
A
191 203Right-handed alpha
Helix 7
AA7
A
215 223Right-handed alpha
Helix 8
AA8
A
247 259Right-handed alpha
Helix 9
AA9
A
268 272Right-handed 310
Helix 10
AB1
A
293 310Right-handed alpha
Helix 11
AB2
A
322 328Right-handed 310
Helix 12
AB3
A
329 337Right-handed alpha
Helix 13
AB4
A
363 367Right-handed 310
Helix 14
AB5
A
369 379Right-handed alpha
Helix 15
AB6
B
56 64Right-handed alpha
Helix 16
AB7
B
78 99Right-handed alpha
Helix 17
AB8
B
100 102Right-handed 310
Helix 18
AB9
B
114 122Right-handed alpha
Helix 19
AC1
B
145 158Right-handed alpha
Helix 20
AC2
B
166 175Right-handed alpha
Helix 21
AC3
B
191 204Right-handed alpha
Helix 22
AC4
B
215 223Right-handed alpha
Helix 23
AC5
B
247 259Right-handed alpha
Helix 24
AC6
B
271 277Right-handed alpha
Helix 25
AC7
B
293 310Right-handed alpha
Helix 26
AC8
B
322 328Right-handed 310
Helix 27
AC9
B
329 338Right-handed alpha
Helix 28
AD1
B
369 379Right-handed alpha
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There are 6 sheets in PDB entry 8F48. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
104 109parallel
Strand 3
A
66 71parallel
Strand 4
A
128 133anti-parallel
Strand 5
A
136 139anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
210 213parallel
Strand 3
A
181 185parallel
Strand 4
A
229 232anti-parallel
Strand 5
A
240 242anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 266first strand
Strand 2
A
318 321parallel
Strand 3
A
283 288parallel
Strand 4
A
345 350anti-parallel
Strand 5
A
355 358anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
104 110parallel
Strand 3
B
66 72parallel
Strand 4
B
128 133anti-parallel
Strand 5
B
136 139anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 163first strand
Strand 2
B
210 213parallel
Strand 3
B
181 185parallel
Strand 4
B
228 232anti-parallel
Strand 5
B
240 241anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 266first strand
Strand 2
B
318 321parallel
Strand 3
B
283 288parallel
Strand 4
B
345 350anti-parallel
Strand 5
B
356 358anti-parallel
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