Analysis of interatomic Contacts of Structural Units in PDB entry:
8F4B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F4B entry

There are 2 chains in PDB entry 8F4B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 205VAL 1530
B
 PHE 2CYS 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8F4B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
214 221Right-handed alpha
Helix 2
AA2
A
224 234Right-handed alpha
Helix 3
AA3
A
249 268Right-handed alpha
Helix 4
AA4
A
321 326Right-handed alpha
Helix 5
AA5
A
327 340Right-handed alpha
Helix 6
AA6
A
341 355Right-handed alpha
Helix 7
AA7
A
360 410Right-handed alpha
Helix 8
AA8
A
411 416Right-handed alpha
Helix 9
AA9
A
419 429Right-handed alpha
Helix 10
AB1
A
429 441Right-handed alpha
Helix 11
AB2
A
442 462Right-handed alpha
Helix 12
AB3
A
463 465Right-handed 310
Helix 13
AB4
A
466 511Right-handed alpha
Helix 14
AB5
A
511 519Right-handed alpha
Helix 15
AB6
A
520 572Right-handed alpha
Helix 16
AB7
A
578 621Right-handed alpha
Helix 17
AB8
A
626 630Right-handed 310
Helix 18
AB9
A
683 692Right-handed alpha
Helix 19
AC1
A
721 728Right-handed alpha
Helix 20
AC2
A
733 744Right-handed alpha
Helix 21
AC3
A
746 753Right-handed alpha
Helix 22
AC4
A
761 765Right-handed 310
Helix 23
AC5
A
769 785Right-handed alpha
Helix 24
AC6
A
799 810Right-handed alpha
Helix 25
AC7
A
831 835Right-handed 310
Helix 26
AC8
A
851 858Right-handed alpha
Helix 27
AC9
A
860 867Right-handed alpha
Helix 28
AD1
A
959 970Right-handed alpha
Helix 29
AD2
A
970 1000Right-handed alpha
Helix 30
AD3
A
1011 1057Right-handed alpha
Helix 31
AD4
A
1059 1066Right-handed alpha
Helix 32
AD5
A
1067 1084Right-handed alpha
Helix 33
AD6
A
1084 1111Right-handed alpha
Helix 34
AD7
A
1112 1116Right-handed 310
Helix 35
AD8
A
1117 1147Right-handed alpha
Helix 36
AD9
A
1147 1160Right-handed alpha
Helix 37
AE1
A
1160 1167Right-handed alpha
Helix 38
AE2
A
1169 1220Right-handed alpha
Helix 39
AE3
A
1225 1237Right-handed alpha
Helix 40
AE4
A
1238 1257Right-handed alpha
Helix 41
AE5
A
1257 1263Right-handed alpha
Helix 42
AE6
A
1264 1268Right-handed 310
Helix 43
AE7
A
1285 1289Right-handed 310
Helix 44
AE8
A
1333 1340Right-handed alpha
Helix 45
AE9
A
1361 1369Right-handed alpha
Helix 46
AF1
A
1382 1388Right-handed alpha
Helix 47
AF2
A
1395 1405Right-handed alpha
Helix 48
AF3
A
1430 1446Right-handed alpha
Helix 49
AF4
A
1462 1475Right-handed alpha
Helix 50
AF5
A
1486 1492Right-handed alpha
Helix 51
AF6
A
1509 1517Right-handed alpha
Helix 52
AF7
A
1518 1528Right-handed alpha
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There are 5 sheets in PDB entry 8F4B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
661 664first strand
Strand 2
A
644 652anti-parallel
Strand 3
A
667 668anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
661 664first strand
Strand 2
A
644 652anti-parallel
Strand 3
A
696 704anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
708 711first strand
Strand 2
A
788 792parallel
Strand 3
A
822 825parallel
Strand 4
A
673 677parallel
Strand 5
A
837 841parallel
Strand 6
A
846 850anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1309 1316first strand
Strand 2
A
1292 1299anti-parallel
Strand 3
A
1347 1352anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1370 1372first strand
Strand 2
A
1449 1453parallel
Strand 3
A
1479 1483parallel
Strand 4
A
1321 1325parallel
Strand 5
A
1495 1498parallel
Strand 6
A
1506 1508anti-parallel
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