Analysis of interatomic Contacts of Structural Units in PDB entry:
8F56

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F56 entry

There are 2 chains in PDB entry 8F56 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 1032
B	MET 1	LEU 1032

There are 73 helices in PDB entry 8F56. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	8	Right-handed alpha
Helix 2	AA2	A	8	29	Right-handed alpha
Helix 3	AA3	A	53	61	Right-handed alpha
Helix 4	AA4	A	61	70	Right-handed alpha
Helix 5	AA5	A	99	118	Right-handed alpha
Helix 6	AA6	A	119	126	Right-handed alpha
Helix 7	AA7	A	150	162	Right-handed alpha
Helix 8	AA8	A	162	168	Right-handed alpha
Helix 9	AA9	A	189	196	Right-handed alpha
Helix 10	AB1	A	199	211	Right-handed alpha
Helix 11	AB2	A	242	248	Right-handed alpha
Helix 12	AB3	A	262	265	Right-handed alpha
Helix 13	AB4	A	298	315	Right-handed alpha
Helix 14	AB5	A	329	359	Right-handed alpha
Helix 15	AB6	A	361	387	Right-handed alpha
Helix 16	AB7	A	391	423	Right-handed alpha
Helix 17	AB8	A	426	452	Right-handed alpha
Helix 18	AB9	A	452	458	Right-handed alpha
Helix 19	AC1	A	460	486	Right-handed alpha
Helix 20	AC2	A	487	496	Right-handed alpha
Helix 21	AC3	A	498	502	Right-handed 310
Helix 22	AC4	A	510	536	Right-handed alpha
Helix 23	AC5	A	536	558	Right-handed alpha
Helix 24	AC6	A	582	600	Right-handed alpha
Helix 25	AC7	A	642	655	Right-handed alpha
Helix 26	AC8	A	690	708	Right-handed alpha
Helix 27	AC9	A	730	737	Right-handed alpha
Helix 28	AD1	A	740	752	Right-handed alpha
Helix 29	AD2	A	775	778	Right-handed 310
Helix 30	AD3	A	780	786	Right-handed 310
Helix 31	AD4	A	834	848	Right-handed alpha
Helix 32	AD5	A	858	891	Right-handed alpha
Helix 33	AD6	A	893	901	Right-handed alpha
Helix 34	AD7	A	902	918	Right-handed alpha
Helix 35	AD8	A	922	954	Right-handed alpha
Helix 36	AD9	A	956	988	Right-handed alpha
Helix 37	AE1	A	993	1030	Right-handed alpha
Helix 38	AE2	B	2	7	Right-handed alpha
Helix 39	AE3	B	8	29	Right-handed alpha
Helix 40	AE4	B	53	61	Right-handed alpha
Helix 41	AE5	B	61	70	Right-handed alpha
Helix 42	AE6	B	99	116	Right-handed alpha
Helix 43	AE7	B	119	126	Right-handed alpha
Helix 44	AE8	B	150	162	Right-handed alpha
Helix 45	AE9	B	162	168	Right-handed alpha
Helix 46	AF1	B	189	196	Right-handed alpha
Helix 47	AF2	B	199	211	Right-handed alpha
Helix 48	AF3	B	242	248	Right-handed alpha
Helix 49	AF4	B	261	265	Right-handed alpha
Helix 50	AF5	B	298	315	Right-handed alpha
Helix 51	AF6	B	329	359	Right-handed alpha
Helix 52	AF7	B	361	386	Right-handed alpha
Helix 53	AF8	B	391	423	Right-handed alpha
Helix 54	AF9	B	426	452	Right-handed alpha
Helix 55	AG1	B	452	457	Right-handed alpha
Helix 56	AG2	B	460	486	Right-handed alpha
Helix 57	AG3	B	487	496	Right-handed alpha
Helix 58	AG4	B	510	536	Right-handed alpha
Helix 59	AG5	B	536	558	Right-handed alpha
Helix 60	AG6	B	582	600	Right-handed alpha
Helix 61	AG7	B	642	657	Right-handed alpha
Helix 62	AG8	B	690	708	Right-handed alpha
Helix 63	AG9	B	730	738	Right-handed alpha
Helix 64	AH1	B	740	753	Right-handed alpha
Helix 65	AH2	B	782	786	Right-handed 310
Helix 66	AH3	B	799	802	Right-handed alpha
Helix 67	AH4	B	834	849	Right-handed alpha
Helix 68	AH5	B	858	891	Right-handed alpha
Helix 69	AH6	B	893	901	Right-handed alpha
Helix 70	AH7	B	902	918	Right-handed alpha
Helix 71	AH8	B	922	954	Right-handed alpha
Helix 72	AH9	B	956	988	Right-handed alpha
Helix 73	AI1	B	993	1030	Right-handed alpha

There are 15 sheets in PDB entry 8F56. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	813	817	anti-parallel
Strand 6	A	820	829	anti-parallel
Strand 7	A	711	716	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	813	817	anti-parallel
Strand 6	A	820	829	anti-parallel
Strand 7	A	679	685	anti-parallel
Strand 8	A	853	857	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	177	first strand
Strand 2	A	287	293	anti-parallel
Strand 3	A	136	144	anti-parallel
Strand 4	A	321	328	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	272	first strand
Strand 2	A	182	188	anti-parallel
Strand 3	A	765	773	parallel
Strand 4	A	755	762	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	253	first strand
Strand 2	A	259	261	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	278	281	anti-parallel
Strand 3	A	605	612	anti-parallel
Strand 4	A	623	630	anti-parallel
Strand 5	A	570	576	anti-parallel
Strand 6	A	661	665	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	803	810	first strand
Strand 2	A	722	729	anti-parallel
Strand 3	B	232	235	parallel
Strand 4	B	215	219	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	788	790	first strand
Strand 2	A	796	798	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	813	817	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	177	first strand
Strand 2	B	284	293	anti-parallel
Strand 3	B	136	144	anti-parallel
Strand 4	B	321	328	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	177	first strand
Strand 2	B	284	293	anti-parallel
Strand 3	B	278	281	anti-parallel
Strand 4	B	605	612	anti-parallel
Strand 5	B	623	630	anti-parallel
Strand 6	B	570	576	anti-parallel
Strand 7	B	661	665	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	269	first strand
Strand 2	B	184	188	anti-parallel
Strand 3	B	765	773	parallel
Strand 4	B	754	762	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	716	first strand
Strand 2	B	822	829	anti-parallel
Strand 3	B	679	685	anti-parallel
Strand 4	B	853	857	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	722	729	first strand
Strand 2	B	803	810	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	788	790	first strand
Strand 2	B	796	798	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F56

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F56