Analysis of interatomic Contacts of Structural Units in PDB entry:
8F5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F5B entry

There is 1 chain in PDB entry 8F5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3ILE 1937
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 84 helices in PDB entry 8F5B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 20Right-handed alpha
Helix 2
AA2
A
24 35Right-handed alpha
Helix 3
AA3
A
37 46Right-handed alpha
Helix 4
AA4
A
61 64Right-handed 310
Helix 5
AA5
A
65 76Right-handed alpha
Helix 6
AA6
A
86 90Right-handed 310
Helix 7
AA7
A
100 113Right-handed alpha
Helix 8
AA8
A
116 137Right-handed alpha
Helix 9
AA9
A
274 289Right-handed alpha
Helix 10
AB1
A
290 300Right-handed alpha
Helix 11
AB2
A
304 308Right-handed 310
Helix 12
AB3
A
314 324Right-handed alpha
Helix 13
AB4
A
367 380Right-handed alpha
Helix 14
AB5
A
380 385Right-handed alpha
Helix 15
AB6
A
389 396Right-handed alpha
Helix 16
AB7
A
404 413Right-handed alpha
Helix 17
AB8
A
415 429Right-handed alpha
Helix 18
AB9
A
436 445Right-handed alpha
Helix 19
AC1
A
503 520Right-handed alpha
Helix 20
AC2
A
530 544Right-handed alpha
Helix 21
AC3
A
574 578Right-handed 310
Helix 22
AC4
A
601 606Right-handed alpha
Helix 23
AC5
A
608 624Right-handed alpha
Helix 24
AC6
A
646 662Right-handed alpha
Helix 25
AC7
A
664 680Right-handed alpha
Helix 26
AC8
A
682 688Right-handed alpha
Helix 27
AC9
A
692 717Right-handed alpha
Helix 28
AD1
A
731 755Right-handed alpha
Helix 29
AD2
A
757 764Right-handed alpha
Helix 30
AD3
A
765 774Right-handed alpha
Helix 31
AD4
A
775 782Right-handed alpha
Helix 32
AD5
A
787 794Right-handed alpha
Helix 33
AD6
A
797 815Right-handed alpha
Helix 34
AD7
A
835 861Right-handed alpha
Helix 35
AD8
A
871 875Right-handed 310
Helix 36
AD9
A
968 976Right-handed alpha
Helix 37
AE1
A
997 1002Right-handed alpha
Helix 38
AE2
A
1019 1028Right-handed alpha
Helix 39
AE3
A
1034 1050Right-handed alpha
Helix 40
AE4
A
1063 1077Right-handed alpha
Helix 41
AE5
A
1093 1107Right-handed alpha
Helix 42
AE6
A
1119 1127Right-handed alpha
Helix 43
AE7
A
1143 1151Right-handed alpha
Helix 44
AE8
A
1207 1216Right-handed alpha
Helix 45
AE9
A
1241 1253Right-handed alpha
Helix 46
AF1
A
1268 1277Right-handed alpha
Helix 47
AF2
A
1348 1368Right-handed alpha
Helix 48
AF3
A
1378 1393Right-handed alpha
Helix 49
AF4
A
1406 1410Right-handed 310
Helix 50
AF5
A
1424 1430Right-handed alpha
Helix 51
AF6
A
1432 1437Right-handed alpha
Helix 52
AF7
A
1529 1545Right-handed alpha
Helix 53
AF8
A
1573 1588Right-handed alpha
Helix 54
AF9
A
1592 1599Right-handed alpha
Helix 55
AG1
A
1601 1610Right-handed alpha
Helix 56
AG2
A
1625 1642Right-handed alpha
Helix 57
AG3
A
1671 1682Right-handed alpha
Helix 58
AG4
A
1684 1693Right-handed alpha
Helix 59
AG5
A
1694 1696Right-handed 310
Helix 60
AG6
A
1697 1707Right-handed alpha
Helix 61
AG7
A
1708 1716Right-handed alpha
Helix 62
AG8
A
1719 1736Right-handed alpha
Helix 63
AG9
A
1737 1750Right-handed alpha
Helix 64
AH1
A
1759 1775Right-handed alpha
Helix 65
AH2
A
1776 1778Right-handed 310
Helix 66
AH3
A
1779 1784Right-handed 310
Helix 67
AH4
A
1789 1815Right-handed alpha
Helix 68
AH5
A
1822 1833Right-handed alpha
Helix 69
AH6
A
1836 1863Right-handed alpha
Helix 70
AH7
A
1875 1880Right-handed alpha
Helix 71
AH8
A
1882 1899Right-handed alpha
Helix 72
AH9
A
1919 1929Right-handed alpha
Helix 73
AI1
A
1977 1986Right-handed alpha
Helix 74
AI2
A
2009 2014Right-handed 310
Helix 75
AI3
A
2028 2040Right-handed alpha
Helix 76
AI4
A
2046 2059Right-handed alpha
Helix 77
AI5
A
2072 2086Right-handed alpha
Helix 78
AI6
A
2105 2119Right-handed alpha
Helix 79
AI7
A
2129 2137Right-handed alpha
Helix 80
AI8
A
2153 2161Right-handed alpha
Helix 81
AI9
A
2184 2193Right-handed alpha
Helix 82
AJ1
A
2214 2225Right-handed alpha
Helix 83
AJ2
A
2225 2230Right-handed alpha
Helix 84
AJ3
A
2240 2250Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 8F5B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 527first strand
Strand 2
A
398 400parallel
Strand 3
A
549 552parallel
Strand 4
A
567 572anti-parallel
Strand 5
A
1654 1657parallel
Strand 6
A
1404 1405anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
632 636first strand
Strand 2
A
1615 1619parallel
Strand 3
A
1560 1561anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
927 937first strand
Strand 2
A
944 954anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
959 963first strand
Strand 2
A
1129 1134parallel
Strand 3
A
1137 1140anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1007 1008first strand
Strand 2
A
1084 1085parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1231 1234first strand
Strand 2
A
1154 1157anti-parallel
Strand 3
A
1264 1266anti-parallel
Strand 4
A
2233 2237anti-parallel
Strand 5
A
2166 2170anti-parallel
Strand 6
A
2206 2208anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1461 1462first strand
Strand 2
A
1513 1514anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1953 1958first strand
Strand 2
A
1940 1946anti-parallel
Strand 3
A
1993 1998anti-parallel
Strand 4
A
2001 2002anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2016 2017first strand
Strand 2
A
2091 2094parallel
Strand 3
A
2122 2125parallel
Strand 4
A
1967 1969parallel
Strand 5
A
2139 2140parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2143 2144first strand
Strand 2
A
2147 2148anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il