Analysis of interatomic Contacts of Structural Units in PDB entry:
8F5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F5D entry

There is 1 chain in PDB entry 8F5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3ALA 798
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8F5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 26Right-handed alpha
Helix 2
AA2
A
35 39Right-handed 310
Helix 3
AA3
A
55 65Right-handed alpha
Helix 4
AA4
A
91 104Right-handed alpha
Helix 5
AA5
A
106 110Right-handed 310
Helix 6
AA6
A
121 136Right-handed alpha
Helix 7
AA7
A
164 178Right-handed alpha
Helix 8
AA8
A
188 195Right-handed alpha
Helix 9
AA9
A
220 232Right-handed alpha
Helix 10
AB1
A
246 256Right-handed alpha
Helix 11
AB2
A
304 321Right-handed alpha
Helix 12
AB3
A
324 333Right-handed alpha
Helix 13
AB4
A
369 388Right-handed alpha
Helix 14
AB5
A
404 417Right-handed alpha
Helix 15
AB6
A
431 441Right-handed alpha
Helix 16
AB7
A
454 465Right-handed alpha
Helix 17
AB8
A
493 504Right-handed alpha
Helix 18
AB9
A
505 507Right-handed 310
Helix 19
AC1
A
532 535Right-handed 310
Helix 20
AC2
A
536 543Right-handed alpha
Helix 21
AC3
A
566 581Right-handed alpha
Helix 22
AC4
A
594 611Right-handed alpha
Helix 23
AC5
A
626 633Right-handed alpha
Helix 24
AC6
A
652 662Right-handed alpha
Helix 25
AC7
A
681 695Right-handed alpha
Helix 26
AC8
A
710 719Right-handed alpha
Helix 27
AC9
A
765 783Right-handed alpha
Helix 28
AD1
A
785 795Right-handed alpha
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There are 6 sheets in PDB entry 8F5D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
44 47parallel
Strand 3
A
69 72parallel
Strand 4
A
86 88parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
140 144anti-parallel
Strand 3
A
182 186parallel
Strand 4
A
112 117parallel
Strand 5
A
202 207parallel
Strand 6
A
239 243parallel
Strand 7
A
261 265parallel
Strand 8
A
273 281parallel
Strand 9
A
284 291anti-parallel
Strand 10
A
294 300anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
361 365anti-parallel
Strand 3
A
471 475parallel
Strand 4
A
391 395parallel
Strand 5
A
419 422parallel
Strand 6
A
450 451parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 485first strand
Strand 2
A
488 491anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 511first strand
Strand 2
A
522 524parallel
Strand 3
A
547 550parallel
Strand 4
A
561 563parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
615 617first strand
Strand 2
A
641 645parallel
Strand 3
A
586 590parallel
Strand 4
A
665 668parallel
Strand 5
A
701 705parallel
Strand 6
A
722 727parallel
Strand 7
A
734 742parallel
Strand 8
A
745 752anti-parallel
Strand 9
A
755 761anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il