Analysis of interatomic Contacts of Structural Units in PDB entry:
8F5G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F5G entry

There are 6 chains in PDB entry 8F5G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 G 1 C 26
A
 GLY -1ASN 167
E
 G 1 C 26
B
 TRP 4MSE 165
F
 G 1 C 26
C
 THR 0SER 174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8F5G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 25Right-handed alpha
Helix 2
AA2
A
65 76Right-handed alpha
Helix 3
AA3
A
92 103Right-handed alpha
Helix 4
AA4
A
131 133Right-handed 310
Helix 5
AA5
B
13 22Right-handed alpha
Helix 6
AA6
B
92 103Right-handed alpha
Helix 7
AA7
B
131 133Right-handed 310
Helix 8
AA8
C
13 26Right-handed alpha
Helix 9
AA9
C
65 76Right-handed alpha
Helix 10
AB1
C
92 103Right-handed alpha
Helix 11
AB2
C
131 133Right-handed 310
Helix 12
AB3
C
169 174Right-handed 310
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There are 11 sheets in PDB entry 8F5G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
57 62anti-parallel
Strand 3
A
3 8anti-parallel
Strand 4
A
89 91anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 52first strand
Strand 2
A
35 42anti-parallel
Strand 3
A
108 109parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 125first strand
Strand 2
A
112 117anti-parallel
Strand 3
A
154 164parallel
Strand 4
A
144 151anti-parallel
Strand 5
A
135 139anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
57 61anti-parallel
Strand 3
B
5 8anti-parallel
Strand 4
B
89 90anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 52first strand
Strand 2
B
35 42anti-parallel
Strand 3
B
108 109parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 125first strand
Strand 2
B
112 117anti-parallel
Strand 3
B
154 165parallel
Strand 4
B
144 151anti-parallel
Strand 5
B
135 139anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 32first strand
Strand 2
C
57 62anti-parallel
Strand 3
C
3 9anti-parallel
Strand 4
C
79 81anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 32first strand
Strand 2
C
57 62anti-parallel
Strand 3
C
3 9anti-parallel
Strand 4
C
90 91anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 52first strand
Strand 2
C
35 42anti-parallel
Strand 3
C
108 109parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 84first strand
Strand 2
C
87 88anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
120 125first strand
Strand 2
C
112 117anti-parallel
Strand 3
C
154 163parallel
Strand 4
C
144 151anti-parallel
Strand 5
C
135 139anti-parallel
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