Analysis of interatomic Contacts of Structural Units in PDB entry:
8F5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F5M entry

There are 2 chains in PDB entry 8F5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3ALA 594
B
 GLU 4ALA 594
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 8F5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 10Right-handed alpha
Helix 2
AA2
A
18 27Right-handed alpha
Helix 3
AA3
A
32 52Right-handed alpha
Helix 4
AA4
A
78 87Right-handed alpha
Helix 5
AA5
A
99 101Right-handed 310
Helix 6
AA6
A
166 168Right-handed 310
Helix 7
AA7
A
194 202Right-handed alpha
Helix 8
AA8
A
205 210Right-handed 310
Helix 9
AA9
A
217 226Right-handed alpha
Helix 10
AB1
A
229 234Right-handed 310
Helix 11
AB2
A
235 238Right-handed 310
Helix 12
AB3
A
257 262Right-handed alpha
Helix 13
AB4
A
317 322Right-handed alpha
Helix 14
AB5
A
323 325Right-handed 310
Helix 15
AB6
A
338 342Right-handed 310
Helix 16
AB7
A
365 397Right-handed alpha
Helix 17
AB8
A
402 419Right-handed alpha
Helix 18
AB9
A
438 447Right-handed alpha
Helix 19
AC1
A
459 469Right-handed alpha
Helix 20
AC2
A
470 476Right-handed 310
Helix 21
AC3
A
479 486Right-handed alpha
Helix 22
AC4
A
486 501Right-handed alpha
Helix 23
AC5
A
505 516Right-handed alpha
Helix 24
AC6
A
523 537Right-handed alpha
Helix 25
AC7
A
538 549Right-handed alpha
Helix 26
AC8
A
552 556Right-handed 310
Helix 27
AC9
A
559 567Right-handed alpha
Helix 28
AD1
A
568 579Right-handed alpha
Helix 29
AD2
A
583 594Right-handed alpha
Helix 30
AD3
B
5 10Right-handed alpha
Helix 31
AD4
B
18 27Right-handed alpha
Helix 32
AD5
B
32 52Right-handed alpha
Helix 33
AD6
B
79 81Right-handed 310
Helix 34
AD7
B
82 87Right-handed alpha
Helix 35
AD8
B
99 101Right-handed 310
Helix 36
AD9
B
166 168Right-handed 310
Helix 37
AE1
B
194 202Right-handed alpha
Helix 38
AE2
B
205 210Right-handed 310
Helix 39
AE3
B
217 226Right-handed alpha
Helix 40
AE4
B
229 234Right-handed 310
Helix 41
AE5
B
235 238Right-handed 310
Helix 42
AE6
B
257 262Right-handed alpha
Helix 43
AE7
B
321 325Right-handed 310
Helix 44
AE8
B
338 342Right-handed 310
Helix 45
AE9
B
365 398Right-handed alpha
Helix 46
AF1
B
402 419Right-handed alpha
Helix 47
AF2
B
438 447Right-handed alpha
Helix 48
AF3
B
462 469Right-handed alpha
Helix 49
AF4
B
470 476Right-handed 310
Helix 50
AF5
B
479 486Right-handed alpha
Helix 51
AF6
B
486 501Right-handed alpha
Helix 52
AF7
B
505 516Right-handed alpha
Helix 53
AF8
B
523 536Right-handed alpha
Helix 54
AF9
B
538 549Right-handed alpha
Helix 55
AG1
B
552 556Right-handed 310
Helix 56
AG2
B
559 567Right-handed alpha
Helix 57
AG3
B
568 579Right-handed alpha
Helix 58
AG4
B
583 593Right-handed alpha
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There are 11 sheets in PDB entry 8F5M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 16first strand
Strand 2
A
64 67anti-parallel
Strand 3
A
59 61anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
143 154parallel
Strand 3
A
114 118parallel
Strand 4
A
162 164anti-parallel
Strand 5
A
102 104parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 97first strand
Strand 2
A
177 185anti-parallel
Strand 3
A
131 140anti-parallel
Strand 4
A
143 154anti-parallel
Strand 5
A
169 170anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 214first strand
Strand 2
A
240 243anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 254first strand
Strand 2
A
313 316parallel
Strand 3
A
271 274anti-parallel
Strand 4
A
299 304parallel
Strand 5
A
284 288anti-parallel
Strand 6
A
332 336anti-parallel
Strand 7
A
249 254anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
423 424anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 16first strand
Strand 2
B
64 67anti-parallel
Strand 3
B
59 61anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 75first strand
Strand 2
B
143 154parallel
Strand 3
B
114 118parallel
Strand 4
B
162 164anti-parallel
Strand 5
B
102 104parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 97first strand
Strand 2
B
177 185anti-parallel
Strand 3
B
131 140anti-parallel
Strand 4
B
143 154anti-parallel
Strand 5
B
169 170anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 214first strand
Strand 2
B
240 243anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 254first strand
Strand 2
B
313 316parallel
Strand 3
B
271 274anti-parallel
Strand 4
B
299 307parallel
Strand 5
B
284 288anti-parallel
Strand 6
B
332 336anti-parallel
Strand 7
B
249 254anti-parallel
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