Analysis of interatomic Contacts of Structural Units in PDB entry:
8F5S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F5S entry

There are 2 chains in PDB entry 8F5S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 26GLY 375
B
 GLN 26ASP 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8F5S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 35Right-handed alpha
Helix 2
AA2
A
41 46Right-handed alpha
Helix 3
AA3
A
55 82Right-handed alpha
Helix 4
AA4
A
83 88Right-handed alpha
Helix 5
AA5
A
89 108Right-handed alpha
Helix 6
AA6
A
114 132Right-handed alpha
Helix 7
AA7
A
134 146Right-handed alpha
Helix 8
AA8
A
147 150Right-handed 310
Helix 9
AA9
A
153 180Right-handed alpha
Helix 10
AB1
A
196 217Right-handed alpha
Helix 11
AB2
A
238 258Right-handed alpha
Helix 12
AB3
A
338 350Right-handed alpha
Helix 13
AB4
B
27 35Right-handed alpha
Helix 14
AB5
B
41 46Right-handed alpha
Helix 15
AB6
B
55 82Right-handed alpha
Helix 16
AB7
B
83 88Right-handed alpha
Helix 17
AB8
B
89 108Right-handed alpha
Helix 18
AB9
B
114 132Right-handed alpha
Helix 19
AC1
B
134 146Right-handed alpha
Helix 20
AC2
B
147 150Right-handed 310
Helix 21
AC3
B
153 180Right-handed alpha
Helix 22
AC4
B
197 217Right-handed alpha
Helix 23
AC5
B
238 258Right-handed alpha
Helix 24
AC6
B
338 350Right-handed alpha
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There are 4 sheets in PDB entry 8F5S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
191 195anti-parallel
Strand 3
A
232 234anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 226first strand
Strand 2
A
268 274parallel
Strand 3
A
278 285anti-parallel
Strand 4
A
363 371anti-parallel
Strand 5
A
353 359anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
191 195anti-parallel
Strand 3
B
232 234anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 225first strand
Strand 2
B
268 274parallel
Strand 3
B
278 285anti-parallel
Strand 4
B
363 371anti-parallel
Strand 5
B
353 359anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il