Analysis of interatomic Contacts of Structural Units in PDB entry:
8F5U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F5U entry

There are 3 chains in PDB entry 8F5U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 12	PRO 530
B	ILE 12	PRO 530
C	PHE 11	GLU 274

There are 93 helices in PDB entry 8F5U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	21	Right-handed alpha
Helix 2	AA2	A	24	31	Right-handed alpha
Helix 3	AA3	A	56	67	Right-handed alpha
Helix 4	AA4	A	79	96	Right-handed alpha
Helix 5	AA5	A	122	126	Right-handed 310
Helix 6	AA6	A	144	148	Right-handed 310
Helix 7	AA7	A	162	167	Right-handed alpha
Helix 8	AA8	A	221	234	Right-handed alpha
Helix 9	AA9	A	246	258	Right-handed alpha
Helix 10	AB1	A	272	278	Right-handed alpha
Helix 11	AB2	A	278	286	Right-handed alpha
Helix 12	AB3	A	293	300	Right-handed alpha
Helix 13	AB4	A	301	303	Right-handed 310
Helix 14	AB5	A	304	320	Right-handed alpha
Helix 15	AB6	A	330	335	Right-handed 310
Helix 16	AB7	A	340	354	Right-handed alpha
Helix 17	AB8	A	361	366	Right-handed alpha
Helix 18	AB9	A	369	387	Right-handed alpha
Helix 19	AC1	A	389	401	Right-handed alpha
Helix 20	AC2	A	406	422	Right-handed alpha
Helix 21	AC3	A	434	443	Right-handed alpha
Helix 22	AC4	A	455	462	Right-handed alpha
Helix 23	AC5	A	463	465	Right-handed 310
Helix 24	AC6	A	480	499	Right-handed alpha
Helix 25	AC7	B	16	21	Right-handed alpha
Helix 26	AC8	B	24	31	Right-handed alpha
Helix 27	AC9	B	56	67	Right-handed alpha
Helix 28	AD1	B	79	96	Right-handed alpha
Helix 29	AD2	B	144	148	Right-handed 310
Helix 30	AD3	B	162	167	Right-handed alpha
Helix 31	AD4	B	221	234	Right-handed alpha
Helix 32	AD5	B	246	258	Right-handed alpha
Helix 33	AD6	B	272	278	Right-handed alpha
Helix 34	AD7	B	278	286	Right-handed alpha
Helix 35	AD8	B	293	300	Right-handed alpha
Helix 36	AD9	B	301	303	Right-handed 310
Helix 37	AE1	B	304	320	Right-handed alpha
Helix 38	AE2	B	330	335	Right-handed 310
Helix 39	AE3	B	340	354	Right-handed alpha
Helix 40	AE4	B	361	366	Right-handed alpha
Helix 41	AE5	B	369	387	Right-handed alpha
Helix 42	AE6	B	389	401	Right-handed alpha
Helix 43	AE7	B	406	422	Right-handed alpha
Helix 44	AE8	B	434	443	Right-handed alpha
Helix 45	AE9	B	455	462	Right-handed alpha
Helix 46	AF1	B	463	465	Right-handed 310
Helix 47	AF2	B	480	499	Right-handed alpha
Helix 48	AF3	C	16	21	Right-handed alpha
Helix 49	AF4	C	24	31	Right-handed alpha
Helix 50	AF5	C	56	67	Right-handed alpha
Helix 51	AF6	C	79	96	Right-handed alpha
Helix 52	AF7	C	144	148	Right-handed 310
Helix 53	AF8	C	162	167	Right-handed alpha
Helix 54	AF9	C	221	234	Right-handed alpha
Helix 55	AG1	C	246	258	Right-handed alpha
Helix 56	AG2	C	272	278	Right-handed alpha
Helix 57	AG3	C	278	286	Right-handed alpha
Helix 58	AG4	C	293	300	Right-handed alpha
Helix 59	AG5	C	301	303	Right-handed 310
Helix 60	AG6	C	304	320	Right-handed alpha
Helix 61	AG7	C	330	335	Right-handed 310
Helix 62	AG8	C	340	354	Right-handed alpha
Helix 63	AG9	C	361	366	Right-handed alpha
Helix 64	AH1	C	369	388	Right-handed alpha
Helix 65	AH2	C	389	401	Right-handed alpha
Helix 66	AH3	C	406	422	Right-handed alpha
Helix 67	AH4	C	434	443	Right-handed alpha
Helix 68	AH5	C	455	462	Right-handed alpha
Helix 69	AH6	C	463	465	Right-handed 310
Helix 70	AH7	C	480	499	Right-handed alpha
Helix 71	AH8	D	16	21	Right-handed alpha
Helix 72	AH9	D	24	31	Right-handed alpha
Helix 73	AI1	D	56	67	Right-handed alpha
Helix 74	AI2	D	79	96	Right-handed alpha
Helix 75	AI3	D	144	148	Right-handed 310
Helix 76	AI4	D	162	166	Right-handed 310
Helix 77	AI5	D	221	234	Right-handed alpha
Helix 78	AI6	D	246	258	Right-handed alpha
Helix 79	AI7	D	272	278	Right-handed alpha
Helix 80	AI8	D	278	286	Right-handed alpha
Helix 81	AI9	D	293	300	Right-handed alpha
Helix 82	AJ1	D	301	303	Right-handed 310
Helix 83	AJ2	D	304	320	Right-handed alpha
Helix 84	AJ3	D	330	335	Right-handed 310
Helix 85	AJ4	D	340	354	Right-handed alpha
Helix 86	AJ5	D	361	366	Right-handed alpha
Helix 87	AJ6	D	369	388	Right-handed alpha
Helix 88	AJ7	D	389	401	Right-handed alpha
Helix 89	AJ8	D	406	423	Right-handed alpha
Helix 90	AJ9	D	434	443	Right-handed alpha
Helix 91	AK1	D	455	462	Right-handed alpha
Helix 92	AK2	D	463	465	Right-handed 310
Helix 93	AK3	D	480	499	Right-handed alpha

There are 14 sheets in PDB entry 8F5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	49	first strand
Strand 2	A	70	74	parallel
Strand 3	A	108	112	parallel
Strand 4	A	238	241	parallel
Strand 5	A	265	270	parallel
Strand 6	A	288	292	parallel
Strand 7	A	323	326	parallel
Strand 8	A	357	360	parallel
Strand 9	A	45	49	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	133	first strand
Strand 2	A	200	202	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	157	first strand
Strand 2	A	138	142	parallel
Strand 3	A	191	198	anti-parallel
Strand 4	A	180	187	anti-parallel
Strand 5	A	172	175	anti-parallel
Strand 6	A	208	209	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	472	first strand
Strand 2	A	449	453	parallel
Strand 3	A	426	430	parallel
Strand 4	A	507	512	parallel
Strand 5	A	523	528	anti-parallel
Strand 6	D	523	528	anti-parallel
Strand 7	D	507	512	anti-parallel
Strand 8	D	426	430	parallel
Strand 9	D	449	453	parallel
Strand 10	D	468	472	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	49	first strand
Strand 2	B	70	74	parallel
Strand 3	B	108	112	parallel
Strand 4	B	238	241	parallel
Strand 5	B	265	270	parallel
Strand 6	B	288	292	parallel
Strand 7	B	323	326	parallel
Strand 8	B	357	360	parallel
Strand 9	B	45	49	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	207	209	anti-parallel
Strand 3	B	172	175	anti-parallel
Strand 4	B	180	186	anti-parallel
Strand 5	B	191	198	anti-parallel
Strand 6	B	138	142	anti-parallel
Strand 7	B	155	157	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	133	first strand
Strand 2	B	200	202	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	472	first strand
Strand 2	B	449	453	parallel
Strand 3	B	427	430	parallel
Strand 4	B	507	512	parallel
Strand 5	B	523	528	anti-parallel
Strand 6	C	523	528	anti-parallel
Strand 7	C	507	512	anti-parallel
Strand 8	C	426	430	parallel
Strand 9	C	449	453	parallel
Strand 10	C	468	472	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	49	first strand
Strand 2	C	70	74	parallel
Strand 3	C	108	112	parallel
Strand 4	C	238	241	parallel
Strand 5	C	265	270	parallel
Strand 6	C	288	292	parallel
Strand 7	C	323	326	parallel
Strand 8	C	357	360	parallel
Strand 9	C	45	49	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	133	first strand
Strand 2	C	200	202	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	157	first strand
Strand 2	C	138	142	parallel
Strand 3	C	191	198	anti-parallel
Strand 4	C	180	187	anti-parallel
Strand 5	C	172	175	anti-parallel
Strand 6	C	208	209	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	49	first strand
Strand 2	D	70	74	parallel
Strand 3	D	108	112	parallel
Strand 4	D	238	241	parallel
Strand 5	D	265	270	parallel
Strand 6	D	288	292	parallel
Strand 7	D	323	326	parallel
Strand 8	D	357	360	parallel
Strand 9	D	45	49	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	133	first strand
Strand 2	D	200	202	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	157	first strand
Strand 2	D	138	142	parallel
Strand 3	D	191	198	anti-parallel
Strand 4	D	180	187	anti-parallel
Strand 5	D	172	175	anti-parallel
Strand 6	D	208	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F5U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F5U