Analysis of interatomic Contacts of Structural Units in PDB entry:
8F5Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F5Y entry

There are 4 chains in PDB entry 8F5Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 142THR 432
B
 GLY 142ILE 431
C
 GLU 685GLY 697
D
 SER 682GLU 696
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8F5Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
144 162Right-handed alpha
Helix 2
AA2
A
194 207Right-handed alpha
Helix 3
AA3
A
234 238Right-handed 310
Helix 4
AA4
A
239 260Right-handed alpha
Helix 5
AA5
A
261 266Right-handed alpha
Helix 6
AA6
A
268 291Right-handed alpha
Helix 7
AA7
A
314 319Right-handed alpha
Helix 8
AA8
A
321 333Right-handed alpha
Helix 9
AA9
A
336 349Right-handed alpha
Helix 10
AB1
A
358 381Right-handed alpha
Helix 11
AB2
A
383 387Right-handed 310
Helix 12
AB3
A
388 418Right-handed alpha
Helix 13
AB4
A
422 430Right-handed alpha
Helix 14
AB5
B
144 162Right-handed alpha
Helix 15
AB6
B
239 260Right-handed alpha
Helix 16
AB7
B
261 266Right-handed alpha
Helix 17
AB8
B
268 290Right-handed alpha
Helix 18
AB9
B
322 333Right-handed alpha
Helix 19
AC1
B
336 349Right-handed alpha
Helix 20
AC2
B
358 381Right-handed alpha
Helix 21
AC3
B
383 387Right-handed 310
Helix 22
AC4
B
388 418Right-handed alpha
Helix 23
AC5
B
422 429Right-handed alpha
Helix 24
AC6
C
687 696Right-handed alpha
Helix 25
AC7
D
683 687Right-handed alpha
Helix 26
AC8
D
687 696Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8F5Y.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 293first strand
Strand 2
A
298 301anti-parallel
Strand 3
A
304 308anti-parallel
Strand 4
A
211 216anti-parallel
Strand 5
A
222 226anti-parallel
Strand 6
B
222 226anti-parallel
Strand 7
B
212 216anti-parallel
Strand 8
B
304 307anti-parallel
Strand 9
B
298 301anti-parallel
Strand 10
B
292 293anti-parallel
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