Analysis of interatomic Contacts of Structural Units in PDB entry:
8F5Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F5Z entry

There are 2 chains in PDB entry 8F5Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 69	ALA 1120
A	THR 69	ALA 1119

There are 59 helices in PDB entry 8F5Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	69	76	Right-handed alpha
Helix 2	AA2	B	102	108	Right-handed alpha
Helix 3	AA3	B	128	133	Right-handed alpha
Helix 4	AA4	B	134	146	Right-handed alpha
Helix 5	AA5	B	196	202	Right-handed alpha
Helix 6	AA6	B	204	213	Right-handed alpha
Helix 7	AA7	B	218	235	Right-handed alpha
Helix 8	AA8	B	270	274	Right-handed 310
Helix 9	AA9	B	275	282	Right-handed alpha
Helix 10	AB1	B	321	331	Right-handed alpha
Helix 11	AB2	B	380	426	Right-handed alpha
Helix 12	AB3	B	430	435	Right-handed alpha
Helix 13	AB4	B	464	479	Right-handed alpha
Helix 14	AB5	B	489	494	Right-handed alpha
Helix 15	AB6	B	569	587	Right-handed alpha
Helix 16	AB7	B	779	787	Right-handed alpha
Helix 17	AB8	B	790	794	Right-handed 310
Helix 18	AB9	B	814	831	Right-handed alpha
Helix 19	AC1	B	876	889	Right-handed alpha
Helix 20	AC2	B	891	896	Right-handed alpha
Helix 21	AC3	B	896	922	Right-handed alpha
Helix 22	AC4	B	931	950	Right-handed alpha
Helix 23	AC5	B	953	958	Right-handed alpha
Helix 24	AC6	B	969	988	Right-handed alpha
Helix 25	AC7	B	997	1001	Right-handed 310
Helix 26	AC8	B	1009	1027	Right-handed alpha
Helix 27	AC9	B	1065	1071	Right-handed alpha
Helix 28	AD1	B	1072	1075	Right-handed 310
Helix 29	AD2	B	1082	1095	Right-handed alpha
Helix 30	AD3	A	70	76	Right-handed alpha
Helix 31	AD4	A	101	107	Right-handed alpha
Helix 32	AD5	A	128	132	Right-handed 310
Helix 33	AD6	A	134	146	Right-handed alpha
Helix 34	AD7	A	149	153	Right-handed 310
Helix 35	AD8	A	196	202	Right-handed alpha
Helix 36	AD9	A	204	213	Right-handed alpha
Helix 37	AE1	A	218	235	Right-handed alpha
Helix 38	AE2	A	275	283	Right-handed alpha
Helix 39	AE3	A	321	332	Right-handed alpha
Helix 40	AE4	A	380	426	Right-handed alpha
Helix 41	AE5	A	430	435	Right-handed alpha
Helix 42	AE6	A	438	442	Right-handed 310
Helix 43	AE7	A	464	479	Right-handed alpha
Helix 44	AE8	A	489	494	Right-handed alpha
Helix 45	AE9	A	497	502	Right-handed alpha
Helix 46	AF1	A	503	505	Right-handed 310
Helix 47	AF2	A	569	587	Right-handed alpha
Helix 48	AF3	A	779	787	Right-handed alpha
Helix 49	AF4	A	814	831	Right-handed alpha
Helix 50	AF5	A	878	892	Right-handed alpha
Helix 51	AF6	A	892	922	Right-handed alpha
Helix 52	AF7	A	927	950	Right-handed alpha
Helix 53	AF8	A	951	954	Right-handed 310
Helix 54	AF9	A	969	988	Right-handed alpha
Helix 55	AG1	A	997	1003	Right-handed alpha
Helix 56	AG2	A	1008	1026	Right-handed alpha
Helix 57	AG3	A	1045	1049	Right-handed 310
Helix 58	AG4	A	1065	1073	Right-handed alpha
Helix 59	AG5	A	1080	1095	Right-handed alpha

There are 14 sheets in PDB entry 8F5Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	80	first strand
Strand 2	B	298	299	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	85	89	anti-parallel
Strand 3	B	178	184	anti-parallel
Strand 4	B	166	173	anti-parallel
Strand 5	B	156	159	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	290	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	365	373	anti-parallel
Strand 4	B	341	342	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	290	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	365	373	anti-parallel
Strand 4	B	238	244	anti-parallel
Strand 5	B	250	257	anti-parallel
Strand 6	B	267	269	anti-parallel
Strand 7	B	530	532	parallel
Strand 8	B	557	559	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	456	first strand
Strand 2	B	447	452	anti-parallel
Strand 3	B	517	523	anti-parallel
Strand 4	B	507	514	anti-parallel
Strand 5	B	484	487	anti-parallel
Strand 6	B	745	748	parallel
Strand 7	B	755	757	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	775	778	first strand
Strand 2	B	766	769	anti-parallel
Strand 3	B	865	873	anti-parallel
Strand 4	B	848	859	anti-parallel
Strand 5	B	835	842	anti-parallel
Strand 6	B	810	812	anti-parallel
Strand 7	B	803	804	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	993	994	first strand
Strand 2	B	1033	1035	parallel
Strand 3	B	1057	1059	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1053	1055	first strand
Strand 2	B	1111	1115	anti-parallel
Strand 3	B	1100	1102	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	80	first strand
Strand 2	A	298	301	anti-parallel
Strand 3	A	96	100	anti-parallel
Strand 4	A	85	89	anti-parallel
Strand 5	A	178	184	anti-parallel
Strand 6	A	166	173	anti-parallel
Strand 7	A	156	159	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	290	first strand
Strand 2	A	335	342	anti-parallel
Strand 3	A	365	373	anti-parallel
Strand 4	A	238	244	anti-parallel
Strand 5	A	250	257	anti-parallel
Strand 6	A	267	269	anti-parallel
Strand 7	A	529	532	parallel
Strand 8	A	557	560	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	460	first strand
Strand 2	A	447	451	anti-parallel
Strand 3	A	518	523	anti-parallel
Strand 4	A	507	512	anti-parallel
Strand 5	A	484	487	anti-parallel
Strand 6	A	745	748	parallel
Strand 7	A	755	757	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	775	778	first strand
Strand 2	A	766	769	anti-parallel
Strand 3	A	865	873	anti-parallel
Strand 4	A	848	859	anti-parallel
Strand 5	A	835	842	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	803	804	first strand
Strand 2	A	810	811	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	991	994	first strand
Strand 2	A	1032	1040	parallel
Strand 3	A	1051	1056	anti-parallel
Strand 4	A	1112	1117	anti-parallel
Strand 5	A	1099	1100	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F5Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F5Z