Analysis of interatomic Contacts of Structural Units in PDB entry:
8F61

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F61 entry

There are 4 chains in PDB entry 8F61 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LEU 1017
B	PRO 3	PRO 1018
C	ALA 2	LEU 1017
D	PRO 3	PRO 1018

There are178 helices in PDB entry 8F61. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	16	Right-handed alpha
Helix 2	AA2	A	17	19	Right-handed 310
Helix 3	AA3	A	30	39	Right-handed alpha
Helix 4	AA4	A	68	79	Right-handed alpha
Helix 5	AA5	A	85	90	Right-handed alpha
Helix 6	AA6	A	96	106	Right-handed alpha
Helix 7	AA7	A	108	120	Right-handed alpha
Helix 8	AA8	A	122	130	Right-handed alpha
Helix 9	AA9	A	136	145	Right-handed 310
Helix 10	AB1	A	151	167	Right-handed alpha
Helix 11	AB2	A	183	188	Right-handed 310
Helix 12	AB3	A	196	209	Right-handed alpha
Helix 13	AB4	A	225	230	Right-handed alpha
Helix 14	AB5	A	237	250	Right-handed alpha
Helix 15	AB6	A	267	274	Right-handed alpha
Helix 16	AB7	A	291	295	Right-handed 310
Helix 17	AB8	A	298	301	Right-handed 310
Helix 18	AB9	A	306	318	Right-handed alpha
Helix 19	AC1	A	341	354	Right-handed alpha
Helix 20	AC2	A	366	370	Right-handed 310
Helix 21	AC3	A	373	383	Right-handed alpha
Helix 22	AC4	A	444	451	Right-handed alpha
Helix 23	AC5	A	480	484	Right-handed 310
Helix 24	AC6	A	488	511	Right-handed alpha
Helix 25	AC7	A	526	531	Right-handed 310
Helix 26	AC8	A	551	555	Right-handed 310
Helix 27	AC9	A	556	567	Right-handed alpha
Helix 28	AD1	A	578	582	Right-handed 310
Helix 29	AD2	A	617	632	Right-handed alpha
Helix 30	AD3	A	646	660	Right-handed alpha
Helix 31	AD4	A	683	686	Right-handed 310
Helix 32	AD5	A	687	702	Right-handed alpha
Helix 33	AD6	A	716	728	Right-handed alpha
Helix 34	AD7	A	767	769	Right-handed 310
Helix 35	AD8	A	770	785	Right-handed alpha
Helix 36	AD9	A	798	808	Right-handed alpha
Helix 37	AE1	A	816	821	Right-handed alpha
Helix 38	AE2	A	825	841	Right-handed alpha
Helix 39	AE3	A	842	847	Right-handed 310
Helix 40	AE4	A	879	897	Right-handed alpha
Helix 41	AE5	A	920	924	Right-handed 310
Helix 42	AE6	A	928	932	Right-handed 310
Helix 43	AE7	A	934	938	Right-handed 310
Helix 44	AE8	A	957	966	Right-handed alpha
Helix 45	AE9	A	990	996	Right-handed alpha
Helix 46	AF1	B	9	16	Right-handed alpha
Helix 47	AF2	B	17	19	Right-handed 310
Helix 48	AF3	B	30	42	Right-handed alpha
Helix 49	AF4	B	68	79	Right-handed alpha
Helix 50	AF5	B	85	90	Right-handed alpha
Helix 51	AF6	B	96	106	Right-handed alpha
Helix 52	AF7	B	108	120	Right-handed alpha
Helix 53	AF8	B	122	130	Right-handed alpha
Helix 54	AF9	B	131	135	Right-handed 310
Helix 55	AG1	B	136	145	Right-handed 310
Helix 56	AG2	B	151	167	Right-handed alpha
Helix 57	AG3	B	178	182	Right-handed 310
Helix 58	AG4	B	183	188	Right-handed 310
Helix 59	AG5	B	196	210	Right-handed alpha
Helix 60	AG6	B	225	230	Right-handed alpha
Helix 61	AG7	B	237	250	Right-handed alpha
Helix 62	AG8	B	267	274	Right-handed alpha
Helix 63	AG9	B	291	295	Right-handed 310
Helix 64	AH1	B	306	318	Right-handed alpha
Helix 65	AH2	B	341	354	Right-handed alpha
Helix 66	AH3	B	366	370	Right-handed 310
Helix 67	AH4	B	373	382	Right-handed alpha
Helix 68	AH5	B	444	450	Right-handed alpha
Helix 69	AH6	B	480	483	Right-handed 310
Helix 70	AH7	B	488	511	Right-handed alpha
Helix 71	AH8	B	526	531	Right-handed 310
Helix 72	AH9	B	551	555	Right-handed 310
Helix 73	AI1	B	556	567	Right-handed alpha
Helix 74	AI2	B	579	582	Right-handed 310
Helix 75	AI3	B	617	632	Right-handed alpha
Helix 76	AI4	B	646	660	Right-handed alpha
Helix 77	AI5	B	683	686	Right-handed 310
Helix 78	AI6	B	687	702	Right-handed alpha
Helix 79	AI7	B	716	728	Right-handed alpha
Helix 80	AI8	B	767	769	Right-handed 310
Helix 81	AI9	B	770	785	Right-handed alpha
Helix 82	AJ1	B	798	808	Right-handed alpha
Helix 83	AJ2	B	816	821	Right-handed alpha
Helix 84	AJ3	B	825	841	Right-handed alpha
Helix 85	AJ4	B	842	847	Right-handed 310
Helix 86	AJ5	B	879	900	Right-handed alpha
Helix 87	AJ6	B	920	925	Right-handed alpha
Helix 88	AJ7	B	928	932	Right-handed 310
Helix 89	AJ8	B	957	967	Right-handed alpha
Helix 90	AJ9	B	990	996	Right-handed alpha
Helix 91	AK1	C	9	16	Right-handed alpha
Helix 92	AK2	C	17	19	Right-handed 310
Helix 93	AK3	C	30	42	Right-handed alpha
Helix 94	AK4	C	68	79	Right-handed alpha
Helix 95	AK5	C	85	90	Right-handed alpha
Helix 96	AK6	C	96	106	Right-handed alpha
Helix 97	AK7	C	108	120	Right-handed alpha
Helix 98	AK8	C	122	130	Right-handed alpha
Helix 99	AK9	C	136	145	Right-handed 310
Helix 100	AL1	C	151	167	Right-handed alpha
Helix 101	AL2	C	178	182	Right-handed 310
Helix 102	AL3	C	183	188	Right-handed 310
Helix 103	AL4	C	196	210	Right-handed alpha
Helix 104	AL5	C	225	230	Right-handed alpha
Helix 105	AL6	C	237	251	Right-handed alpha
Helix 106	AL7	C	267	274	Right-handed alpha
Helix 107	AL8	C	291	295	Right-handed 310
Helix 108	AL9	C	306	318	Right-handed alpha
Helix 109	AM1	C	341	355	Right-handed alpha
Helix 110	AM2	C	366	370	Right-handed 310
Helix 111	AM3	C	373	383	Right-handed alpha
Helix 112	AM4	C	444	451	Right-handed alpha
Helix 113	AM5	C	488	511	Right-handed alpha
Helix 114	AM6	C	526	531	Right-handed 310
Helix 115	AM7	C	551	555	Right-handed 310
Helix 116	AM8	C	556	567	Right-handed alpha
Helix 117	AM9	C	578	582	Right-handed 310
Helix 118	AN1	C	617	632	Right-handed alpha
Helix 119	AN2	C	646	660	Right-handed alpha
Helix 120	AN3	C	683	686	Right-handed 310
Helix 121	AN4	C	687	702	Right-handed alpha
Helix 122	AN5	C	716	728	Right-handed alpha
Helix 123	AN6	C	767	769	Right-handed 310
Helix 124	AN7	C	770	785	Right-handed alpha
Helix 125	AN8	C	798	808	Right-handed alpha
Helix 126	AN9	C	816	821	Right-handed alpha
Helix 127	AO1	C	825	841	Right-handed alpha
Helix 128	AO2	C	842	847	Right-handed 310
Helix 129	AO3	C	879	899	Right-handed alpha
Helix 130	AO4	C	920	925	Right-handed alpha
Helix 131	AO5	C	928	932	Right-handed 310
Helix 132	AO6	C	934	938	Right-handed 310
Helix 133	AO7	C	957	967	Right-handed alpha
Helix 134	AO8	C	990	996	Right-handed alpha
Helix 135	AO9	D	9	16	Right-handed alpha
Helix 136	AP1	D	30	42	Right-handed alpha
Helix 137	AP2	D	68	79	Right-handed alpha
Helix 138	AP3	D	85	90	Right-handed alpha
Helix 139	AP4	D	96	106	Right-handed alpha
Helix 140	AP5	D	108	120	Right-handed alpha
Helix 141	AP6	D	122	130	Right-handed alpha
Helix 142	AP7	D	131	135	Right-handed 310
Helix 143	AP8	D	136	145	Right-handed 310
Helix 144	AP9	D	151	165	Right-handed alpha
Helix 145	AQ1	D	178	182	Right-handed 310
Helix 146	AQ2	D	183	188	Right-handed 310
Helix 147	AQ3	D	196	210	Right-handed alpha
Helix 148	AQ4	D	225	230	Right-handed alpha
Helix 149	AQ5	D	237	251	Right-handed alpha
Helix 150	AQ6	D	267	275	Right-handed alpha
Helix 151	AQ7	D	291	295	Right-handed 310
Helix 152	AQ8	D	298	301	Right-handed 310
Helix 153	AQ9	D	306	318	Right-handed alpha
Helix 154	AR1	D	341	353	Right-handed alpha
Helix 155	AR2	D	373	383	Right-handed alpha
Helix 156	AR3	D	444	451	Right-handed alpha
Helix 157	AR4	D	480	484	Right-handed 310
Helix 158	AR5	D	488	511	Right-handed alpha
Helix 159	AR6	D	526	531	Right-handed 310
Helix 160	AR7	D	551	555	Right-handed 310
Helix 161	AR8	D	556	567	Right-handed alpha
Helix 162	AR9	D	578	582	Right-handed 310
Helix 163	AS1	D	617	632	Right-handed alpha
Helix 164	AS2	D	646	660	Right-handed alpha
Helix 165	AS3	D	683	686	Right-handed 310
Helix 166	AS4	D	687	702	Right-handed alpha
Helix 167	AS5	D	716	728	Right-handed alpha
Helix 168	AS6	D	767	769	Right-handed 310
Helix 169	AS7	D	770	785	Right-handed alpha
Helix 170	AS8	D	798	807	Right-handed alpha
Helix 171	AS9	D	816	821	Right-handed alpha
Helix 172	AT1	D	823	825	Right-handed 310
Helix 173	AT2	D	826	841	Right-handed alpha
Helix 174	AT3	D	879	897	Right-handed alpha
Helix 175	AT4	D	920	924	Right-handed 310
Helix 176	AT5	D	928	932	Right-handed 310
Helix 177	AT6	D	957	967	Right-handed alpha
Helix 178	AT7	D	990	996	Right-handed alpha

There are 39 sheets in PDB entry 8F61. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	257	first strand
Strand 2	A	214	218	parallel
Strand 3	A	189	193	parallel
Strand 4	A	276	281	parallel
Strand 5	A	476	478	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	288	first strand
Strand 2	A	440	441	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	305	first strand
Strand 2	A	433	436	parallel
Strand 3	A	334	338	parallel
Strand 4	A	358	362	parallel
Strand 5	A	386	388	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	399	first strand
Strand 2	A	402	413	anti-parallel
Strand 3	A	419	429	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	537	first strand
Strand 2	A	540	542	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	546	548	first strand
Strand 2	A	570	572	parallel
Strand 3	A	636	641	parallel
Strand 4	A	664	668	parallel
Strand 5	A	706	710	parallel
Strand 6	A	732	734	parallel
Strand 7	A	790	792	parallel
Strand 8	A	812	815	parallel
Strand 9	A	546	548	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	592	first strand
Strand 2	A	607	609	anti-parallel
Strand 3	A	763	766	anti-parallel
Strand 4	A	738	740	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	859	860	first strand
Strand 2	A	863	864	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	944	948	first strand
Strand 2	A	1002	1006	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	971	973	first strand
Strand 2	A	980	982	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	257	first strand
Strand 2	B	214	218	parallel
Strand 3	B	190	193	parallel
Strand 4	B	278	281	parallel
Strand 5	B	476	478	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	288	first strand
Strand 2	B	440	441	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	305	first strand
Strand 2	B	433	436	parallel
Strand 3	B	334	338	parallel
Strand 4	B	358	362	parallel
Strand 5	B	386	388	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	399	first strand
Strand 2	B	402	413	anti-parallel
Strand 3	B	419	430	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	537	first strand
Strand 2	B	540	542	anti-parallel

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There are 10 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	576	577	first strand
Strand 2	B	636	642	parallel
Strand 3	B	664	668	parallel
Strand 4	B	706	709	parallel
Strand 5	B	731	734	parallel
Strand 6	B	790	792	parallel
Strand 7	B	812	815	parallel
Strand 8	B	546	548	parallel
Strand 9	B	570	572	parallel
Strand 10	B	636	642	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	590	592	first strand
Strand 2	B	607	609	anti-parallel
Strand 3	B	763	766	anti-parallel
Strand 4	B	738	740	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	944	948	first strand
Strand 2	B	1002	1006	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	971	973	first strand
Strand 2	B	980	982	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	256	first strand
Strand 2	C	214	217	parallel
Strand 3	C	190	193	parallel
Strand 4	C	278	281	parallel
Strand 5	C	476	478	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	288	first strand
Strand 2	C	440	441	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	305	first strand
Strand 2	C	433	436	parallel
Strand 3	C	333	338	parallel
Strand 4	C	356	362	parallel
Strand 5	C	386	388	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	399	first strand
Strand 2	C	402	413	anti-parallel
Strand 3	C	419	430	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	537	first strand
Strand 2	C	540	542	anti-parallel

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There are 9 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	546	548	first strand
Strand 2	C	570	572	parallel
Strand 3	C	636	641	parallel
Strand 4	C	664	668	parallel
Strand 5	C	706	710	parallel
Strand 6	C	732	734	parallel
Strand 7	C	790	792	parallel
Strand 8	C	812	815	parallel
Strand 9	C	546	548	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	590	592	first strand
Strand 2	C	607	609	anti-parallel
Strand 3	C	763	766	anti-parallel
Strand 4	C	738	740	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	944	948	first strand
Strand 2	C	1002	1006	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	971	973	first strand
Strand 2	C	980	982	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	254	257	first strand
Strand 2	D	214	218	parallel
Strand 3	D	190	193	parallel
Strand 4	D	278	281	parallel
Strand 5	D	476	478	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	287	288	first strand
Strand 2	D	440	441	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	303	305	first strand
Strand 2	D	433	436	parallel
Strand 3	D	333	338	parallel
Strand 4	D	356	362	parallel
Strand 5	D	386	388	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	391	399	first strand
Strand 2	D	402	413	anti-parallel
Strand 3	D	419	430	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	535	537	first strand
Strand 2	D	540	542	anti-parallel

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There are 9 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	546	548	first strand
Strand 2	D	570	572	parallel
Strand 3	D	636	641	parallel
Strand 4	D	664	668	parallel
Strand 5	D	706	709	parallel
Strand 6	D	732	734	parallel
Strand 7	D	790	793	parallel
Strand 8	D	812	815	parallel
Strand 9	D	546	548	parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	590	592	first strand
Strand 2	D	607	609	anti-parallel
Strand 3	D	763	766	anti-parallel
Strand 4	D	738	740	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	743	744	first strand
Strand 2	D	750	751	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	859	860	first strand
Strand 2	D	863	864	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	944	948	first strand
Strand 2	D	1002	1006	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	971	973	first strand
Strand 2	D	980	982	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F61

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F61