Analysis of interatomic Contacts of Structural Units in PDB entry:
8F69

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F69 entry

There are 4 chains in PDB entry 8F69 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 41	ASN 458
A	VAL 38	VAL 459
C	C 1	G 18
D	C 1	G 18

There are 36 helices in PDB entry 8F69. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	41	50	Right-handed alpha
Helix 2	AA2	B	57	60	Right-handed 310
Helix 3	AA3	B	61	68	Right-handed alpha
Helix 4	AA4	B	74	93	Right-handed alpha
Helix 5	AA5	B	123	133	Right-handed alpha
Helix 6	AA6	B	137	152	Right-handed alpha
Helix 7	AA7	B	159	166	Right-handed alpha
Helix 8	AA8	B	166	174	Right-handed alpha
Helix 9	AA9	B	221	240	Right-handed alpha
Helix 10	AB1	B	243	245	Right-handed 310
Helix 11	AB2	B	282	289	Right-handed alpha
Helix 12	AB3	B	293	297	Right-handed 310
Helix 13	AB4	B	316	327	Right-handed alpha
Helix 14	AB5	B	365	383	Right-handed alpha
Helix 15	AB6	B	391	393	Right-handed 310
Helix 16	AB7	B	398	409	Right-handed alpha
Helix 17	AB8	B	418	423	Right-handed alpha
Helix 18	AB9	B	444	458	Right-handed alpha
Helix 19	AC1	A	39	50	Right-handed alpha
Helix 20	AC2	A	61	68	Right-handed alpha
Helix 21	AC3	A	74	93	Right-handed alpha
Helix 22	AC4	A	123	133	Right-handed alpha
Helix 23	AC5	A	137	152	Right-handed alpha
Helix 24	AC6	A	159	166	Right-handed alpha
Helix 25	AC7	A	166	174	Right-handed alpha
Helix 26	AC8	A	218	240	Right-handed alpha
Helix 27	AC9	A	243	245	Right-handed 310
Helix 28	AD1	A	282	289	Right-handed alpha
Helix 29	AD2	A	292	297	Right-handed 310
Helix 30	AD3	A	316	327	Right-handed alpha
Helix 31	AD4	A	333	338	Right-handed alpha
Helix 32	AD5	A	365	383	Right-handed alpha
Helix 33	AD6	A	389	393	Right-handed 310
Helix 34	AD7	A	398	409	Right-handed alpha
Helix 35	AD8	A	418	425	Right-handed alpha
Helix 36	AD9	A	444	458	Right-handed alpha

There are 11 sheets in PDB entry 8F69. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	180	191	parallel
Strand 3	B	205	218	anti-parallel
Strand 4	B	307	315	anti-parallel
Strand 5	B	270	281	anti-parallel
Strand 6	B	259	267	anti-parallel
Strand 7	B	247	253	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	154	155	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	122	first strand
Strand 2	A	120	122	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	300	first strand
Strand 2	B	303	305	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	330	first strand
Strand 2	B	344	346	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	389	first strand
Strand 2	B	357	361	parallel
Strand 3	B	413	417	parallel
Strand 4	B	426	431	anti-parallel
Strand 5	B	437	441	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	180	191	parallel
Strand 3	A	205	217	anti-parallel
Strand 4	A	308	315	anti-parallel
Strand 5	A	270	281	anti-parallel
Strand 6	A	259	267	anti-parallel
Strand 7	A	247	253	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	154	155	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	300	first strand
Strand 2	A	303	305	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	330	first strand
Strand 2	A	344	346	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	388	first strand
Strand 2	A	357	361	parallel
Strand 3	A	413	417	parallel
Strand 4	A	426	431	anti-parallel
Strand 5	A	438	441	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F69

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F69