Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F6D entry

There are 8 chains in PDB entry 8F6D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 429	ASP 583
B	TYR 33	GLU 196
C	ILE 434	LEU 582
D	GLU 32	LEU 194
E	GLU 430	LEU 582
F	ASP 34	LYS 197
G	ASN 433	LEU 582
H	TYR 33	LYS 197

There are 57 helices in PDB entry 8F6D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	429	444	Right-handed alpha
Helix 2	AA2	A	445	450	Right-handed alpha
Helix 3	AA3	A	466	477	Right-handed alpha
Helix 4	AA4	A	498	501	Right-handed 310
Helix 5	AA5	A	511	519	Right-handed alpha
Helix 6	AA6	A	530	539	Right-handed alpha
Helix 7	AA7	A	569	579	Right-handed alpha
Helix 8	AA8	B	41	53	Right-handed alpha
Helix 9	AA9	B	86	93	Right-handed alpha
Helix 10	AB1	B	94	96	Right-handed 310
Helix 11	AB2	B	112	128	Right-handed alpha
Helix 12	AB3	B	129	134	Right-handed alpha
Helix 13	AB4	B	152	159	Right-handed alpha
Helix 14	AB5	B	179	195	Right-handed alpha
Helix 15	AB6	C	436	444	Right-handed alpha
Helix 16	AB7	C	445	450	Right-handed alpha
Helix 17	AB8	C	466	476	Right-handed alpha
Helix 18	AB9	C	498	501	Right-handed 310
Helix 19	AC1	C	511	519	Right-handed alpha
Helix 20	AC2	C	530	539	Right-handed alpha
Helix 21	AC3	C	569	579	Right-handed alpha
Helix 22	AC4	D	43	52	Right-handed alpha
Helix 23	AC5	D	86	93	Right-handed alpha
Helix 24	AC6	D	94	96	Right-handed 310
Helix 25	AC7	D	112	128	Right-handed alpha
Helix 26	AC8	D	129	134	Right-handed alpha
Helix 27	AC9	D	151	160	Right-handed alpha
Helix 28	AD1	D	181	194	Right-handed alpha
Helix 29	AD2	E	431	444	Right-handed alpha
Helix 30	AD3	E	445	450	Right-handed alpha
Helix 31	AD4	E	466	477	Right-handed alpha
Helix 32	AD5	E	498	501	Right-handed 310
Helix 33	AD6	E	511	519	Right-handed alpha
Helix 34	AD7	E	530	539	Right-handed alpha
Helix 35	AD8	E	540	542	Right-handed 310
Helix 36	AD9	E	569	579	Right-handed alpha
Helix 37	AE1	F	41	52	Right-handed alpha
Helix 38	AE2	F	86	93	Right-handed alpha
Helix 39	AE3	F	94	96	Right-handed 310
Helix 40	AE4	F	112	128	Right-handed alpha
Helix 41	AE5	F	151	160	Right-handed alpha
Helix 42	AE6	F	160	165	Right-handed alpha
Helix 43	AE7	F	180	197	Right-handed alpha
Helix 44	AE8	G	434	444	Right-handed alpha
Helix 45	AE9	G	445	450	Right-handed alpha
Helix 46	AF1	G	466	477	Right-handed alpha
Helix 47	AF2	G	498	501	Right-handed 310
Helix 48	AF3	G	510	519	Right-handed alpha
Helix 49	AF4	G	530	540	Right-handed alpha
Helix 50	AF5	G	569	579	Right-handed alpha
Helix 51	AF6	H	41	46	Right-handed alpha
Helix 52	AF7	H	86	92	Right-handed alpha
Helix 53	AF8	H	93	96	Right-handed 310
Helix 54	AF9	H	112	128	Right-handed alpha
Helix 55	AG1	H	152	160	Right-handed alpha
Helix 56	AG2	H	160	165	Right-handed alpha
Helix 57	AG3	H	181	197	Right-handed alpha

There are 15 sheets in PDB entry 8F6D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	452	first strand
Strand 2	A	560	568	anti-parallel
Strand 3	A	545	552	anti-parallel
Strand 4	A	523	526	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	460	first strand
Strand 2	A	480	484	parallel
Strand 3	A	491	496	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	465	first strand
Strand 2	A	509	510	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	82	first strand
Strand 2	B	34	39	parallel
Strand 3	B	102	106	parallel
Strand 4	B	137	140	parallel
Strand 5	B	170	172	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	452	first strand
Strand 2	C	562	568	anti-parallel
Strand 3	C	545	550	anti-parallel
Strand 4	C	523	526	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	459	460	first strand
Strand 2	C	480	484	parallel
Strand 3	C	491	496	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	464	465	first strand
Strand 2	C	509	510	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	69	first strand
Strand 2	D	78	82	anti-parallel
Strand 3	D	33	39	parallel
Strand 4	D	103	108	parallel
Strand 5	D	137	142	parallel
Strand 6	D	170	174	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	451	452	first strand
Strand 2	E	562	568	anti-parallel
Strand 3	E	545	550	anti-parallel
Strand 4	E	524	526	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	459	460	first strand
Strand 2	E	480	484	parallel
Strand 3	E	491	496	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	464	465	first strand
Strand 2	E	509	510	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	39	first strand
Strand 2	F	103	106	parallel
Strand 3	F	137	140	parallel
Strand 4	F	170	172	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	451	452	first strand
Strand 2	G	562	568	anti-parallel
Strand 3	G	545	550	anti-parallel
Strand 4	G	523	526	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	459	460	first strand
Strand 2	G	480	484	parallel
Strand 3	G	491	496	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	79	82	first strand
Strand 2	H	34	39	parallel
Strand 3	H	103	107	parallel
Strand 4	H	137	141	parallel
Strand 5	H	170	174	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F6D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6D