Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F6E entry

There are 6 chains in PDB entry 8F6E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 11	GLU 292
C	SER 1	GLY 202
D	GLU 4	PRO 230
B	VAL 11	GLU 292
E	SER 1	GLY 202
F	GLU 4	PRO 230

There are 22 helices in PDB entry 8F6E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	32	Right-handed alpha
Helix 2	AA2	A	38	67	Right-handed alpha
Helix 3	AA3	A	80	109	Right-handed alpha
Helix 4	AA4	A	116	142	Right-handed alpha
Helix 5	AA5	A	147	175	Right-handed alpha
Helix 6	AA6	A	180	208	Right-handed alpha
Helix 7	AA7	A	213	222	Right-handed alpha
Helix 8	AA8	A	258	277	Right-handed alpha
Helix 9	AA9	C	124	130	Right-handed alpha
Helix 10	AB1	C	184	190	Right-handed alpha
Helix 11	AB2	D	90	94	Right-handed 310
Helix 12	AB3	B	12	34	Right-handed alpha
Helix 13	AB4	B	39	67	Right-handed alpha
Helix 14	AB5	B	80	109	Right-handed alpha
Helix 15	AB6	B	115	142	Right-handed alpha
Helix 16	AB7	B	147	175	Right-handed alpha
Helix 17	AB8	B	177	208	Right-handed alpha
Helix 18	AB9	B	213	222	Right-handed alpha
Helix 19	AC1	B	260	277	Right-handed alpha
Helix 20	AC2	E	124	130	Right-handed alpha
Helix 21	AC3	E	184	190	Right-handed alpha
Helix 22	AC4	F	90	94	Right-handed 310

There are 23 sheets in PDB entry 8F6E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	244	254	anti-parallel
Strand 3	A	239	241	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	244	254	anti-parallel
Strand 3	A	280	289	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	104	107	parallel
Strand 3	C	86	88	anti-parallel
Strand 4	C	35	39	anti-parallel
Strand 5	C	46	50	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	25	first strand
Strand 2	C	71	76	anti-parallel
Strand 3	C	63	68	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	91	first strand
Strand 2	C	99	100	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	119	first strand
Strand 2	C	135	139	anti-parallel
Strand 3	C	177	180	anti-parallel
Strand 4	C	162	165	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	10	first strand
Strand 2	D	24	28	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	54	first strand
Strand 2	D	37	42	anti-parallel
Strand 3	D	95	99	anti-parallel
Strand 4	D	125	127	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	76	first strand
Strand 2	D	81	86	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	107	first strand
Strand 2	D	113	114	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	141	first strand
Strand 2	D	155	162	anti-parallel
Strand 3	D	193	199	anti-parallel
Strand 4	D	180	182	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	141	first strand
Strand 2	D	155	162	anti-parallel
Strand 3	D	193	199	anti-parallel
Strand 4	D	186	187	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	171	first strand
Strand 2	D	212	214	anti-parallel
Strand 3	D	225	227	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	241	first strand
Strand 2	B	244	254	anti-parallel
Strand 3	B	280	289	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	8	first strand
Strand 2	E	20	26	anti-parallel
Strand 3	E	71	76	anti-parallel
Strand 4	E	63	68	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	13	first strand
Strand 2	E	104	107	parallel
Strand 3	E	86	88	anti-parallel
Strand 4	E	35	39	anti-parallel
Strand 5	E	46	50	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	91	first strand
Strand 2	E	99	100	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	119	first strand
Strand 2	E	135	141	anti-parallel
Strand 3	E	175	180	anti-parallel
Strand 4	E	162	165	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	10	first strand
Strand 2	F	22	28	anti-parallel
Strand 3	F	81	86	anti-parallel
Strand 4	F	71	76	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	53	first strand
Strand 2	F	38	42	anti-parallel
Strand 3	F	95	99	anti-parallel
Strand 4	F	125	127	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	107	first strand
Strand 2	F	113	114	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	141	first strand
Strand 2	F	155	160	anti-parallel
Strand 3	F	194	199	anti-parallel
Strand 4	F	180	182	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	171	first strand
Strand 2	F	212	217	anti-parallel
Strand 3	F	225	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F6E

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6E