Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F6F entry

There are 6 chains in PDB entry 8F6F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 10	GLU 292
C	SER 1	GLY 202
D	GLU 4	PRO 230
B	TRP 10	GLU 292
E	SER 1	GLY 202
F	GLU 4	PRO 230

There are 23 helices in PDB entry 8F6F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	36	Right-handed alpha
Helix 2	AA2	A	41	67	Right-handed alpha
Helix 3	AA3	A	79	108	Right-handed alpha
Helix 4	AA4	A	118	140	Right-handed alpha
Helix 5	AA5	A	149	158	Right-handed alpha
Helix 6	AA6	A	158	174	Right-handed alpha
Helix 7	AA7	A	181	208	Right-handed alpha
Helix 8	AA8	A	214	225	Right-handed alpha
Helix 9	AA9	A	258	277	Right-handed alpha
Helix 10	AB1	C	123	130	Right-handed alpha
Helix 11	AB2	C	185	189	Right-handed alpha
Helix 12	AB3	B	11	36	Right-handed alpha
Helix 13	AB4	B	40	66	Right-handed alpha
Helix 14	AB5	B	79	102	Right-handed alpha
Helix 15	AB6	B	103	108	Right-handed alpha
Helix 16	AB7	B	118	140	Right-handed alpha
Helix 17	AB8	B	149	158	Right-handed alpha
Helix 18	AB9	B	158	174	Right-handed alpha
Helix 19	AC1	B	181	208	Right-handed alpha
Helix 20	AC2	B	214	225	Right-handed alpha
Helix 21	AC3	B	258	277	Right-handed alpha
Helix 22	AC4	E	123	130	Right-handed alpha
Helix 23	AC5	E	187	191	Right-handed 310

There are 22 sheets in PDB entry 8F6F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	250	254	anti-parallel
Strand 3	A	285	289	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	244	247	anti-parallel
Strand 3	A	281	282	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	25	first strand
Strand 2	C	71	76	anti-parallel
Strand 3	C	63	66	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	46	50	anti-parallel
Strand 3	C	36	39	anti-parallel
Strand 4	C	86	88	anti-parallel
Strand 5	C	104	105	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	120	first strand
Strand 2	C	131	141	anti-parallel
Strand 3	C	175	184	anti-parallel
Strand 4	C	162	165	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	10	first strand
Strand 2	D	22	28	anti-parallel
Strand 3	D	81	86	anti-parallel
Strand 4	D	71	76	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	63	first strand
Strand 2	D	48	55	anti-parallel
Strand 3	D	37	42	anti-parallel
Strand 4	D	96	98	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	107	first strand
Strand 2	D	113	114	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	141	first strand
Strand 2	D	156	162	anti-parallel
Strand 3	D	193	199	anti-parallel
Strand 4	D	180	182	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	141	first strand
Strand 2	D	156	162	anti-parallel
Strand 3	D	193	199	anti-parallel
Strand 4	D	186	187	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	170	first strand
Strand 2	D	212	217	anti-parallel
Strand 3	D	222	227	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	250	254	anti-parallel
Strand 3	B	285	289	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	244	247	anti-parallel
Strand 3	B	280	282	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	23	first strand
Strand 2	E	73	76	anti-parallel
Strand 3	E	63	65	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	55	first strand
Strand 2	E	46	50	anti-parallel
Strand 3	E	36	39	anti-parallel
Strand 4	E	86	88	anti-parallel
Strand 5	E	104	105	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	91	first strand
Strand 2	E	99	100	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	120	first strand
Strand 2	E	131	141	anti-parallel
Strand 3	E	175	184	anti-parallel
Strand 4	E	162	165	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	10	first strand
Strand 2	F	22	28	anti-parallel
Strand 3	F	81	86	anti-parallel
Strand 4	F	71	76	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	63	first strand
Strand 2	F	48	55	anti-parallel
Strand 3	F	37	42	anti-parallel
Strand 4	F	96	98	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	107	first strand
Strand 2	F	113	114	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	141	first strand
Strand 2	F	156	162	anti-parallel
Strand 3	F	193	199	anti-parallel
Strand 4	F	180	182	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	170	first strand
Strand 2	F	212	217	anti-parallel
Strand 3	F	222	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F6F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6F