Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F6H entry

There are 6 chains in PDB entry 8F6H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 7	VAL 291
B	VAL 11	VAL 291
C	SER 1	GLY 202
D	GLU 4	PRO 230
E	SER 1	GLY 202
F	GLU 4	PRO 230

There are 24 helices in PDB entry 8F6H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	34	Right-handed alpha
Helix 2	AA2	A	38	62	Right-handed alpha
Helix 3	AA3	A	82	109	Right-handed alpha
Helix 4	AA4	A	118	140	Right-handed alpha
Helix 5	AA5	A	146	176	Right-handed alpha
Helix 6	AA6	A	179	208	Right-handed alpha
Helix 7	AA7	A	213	226	Right-handed alpha
Helix 8	AA8	A	258	277	Right-handed alpha
Helix 9	AA9	B	13	34	Right-handed alpha
Helix 10	AB1	B	38	64	Right-handed alpha
Helix 11	AB2	B	79	109	Right-handed alpha
Helix 12	AB3	B	115	141	Right-handed alpha
Helix 13	AB4	B	148	175	Right-handed alpha
Helix 14	AB5	B	177	206	Right-handed alpha
Helix 15	AB6	B	213	226	Right-handed alpha
Helix 16	AB7	B	257	277	Right-handed alpha
Helix 17	AB8	C	80	84	Right-handed 310
Helix 18	AB9	C	123	130	Right-handed alpha
Helix 19	AC1	C	184	190	Right-handed alpha
Helix 20	AC2	D	173	175	Right-handed 310
Helix 21	AC3	E	123	129	Right-handed alpha
Helix 22	AC4	E	184	189	Right-handed alpha
Helix 23	AC5	F	64	68	Right-handed 310
Helix 24	AC6	F	173	175	Right-handed 310

There are 23 sheets in PDB entry 8F6H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	245	254	anti-parallel
Strand 3	A	280	289	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	241	first strand
Strand 2	B	244	254	anti-parallel
Strand 3	B	280	282	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	241	first strand
Strand 2	B	244	254	anti-parallel
Strand 3	B	285	289	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	20	26	anti-parallel
Strand 3	C	71	76	anti-parallel
Strand 4	C	63	68	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	104	107	parallel
Strand 3	C	86	87	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	46	50	anti-parallel
Strand 3	C	34	38	anti-parallel
Strand 4	C	89	91	anti-parallel
Strand 5	C	99	100	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	120	first strand
Strand 2	C	132	139	anti-parallel
Strand 3	C	176	183	anti-parallel
Strand 4	C	161	165	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	148	first strand
Strand 2	C	198	199	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	10	first strand
Strand 2	D	23	28	anti-parallel
Strand 3	D	81	84	anti-parallel
Strand 4	D	73	76	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	15	first strand
Strand 2	D	125	129	parallel
Strand 3	D	95	102	anti-parallel
Strand 4	D	37	42	anti-parallel
Strand 5	D	48	54	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	15	first strand
Strand 2	D	125	129	parallel
Strand 3	D	95	102	anti-parallel
Strand 4	D	118	121	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	141	first strand
Strand 2	D	155	162	anti-parallel
Strand 3	D	197	199	anti-parallel
Strand 4	D	181	182	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	141	first strand
Strand 2	D	155	162	anti-parallel
Strand 3	D	193	195	anti-parallel
Strand 4	D	186	187	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	171	first strand
Strand 2	D	212	217	anti-parallel
Strand 3	D	222	227	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	8	first strand
Strand 2	E	20	26	anti-parallel
Strand 3	E	71	76	anti-parallel
Strand 4	E	63	68	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	14	first strand
Strand 2	E	104	108	parallel
Strand 3	E	86	91	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	46	50	anti-parallel
Strand 6	E	54	55	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	119	first strand
Strand 2	E	132	141	anti-parallel
Strand 3	E	175	183	anti-parallel
Strand 4	E	161	165	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	148	first strand
Strand 2	E	198	199	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	10	first strand
Strand 2	F	20	28	anti-parallel
Strand 3	F	81	87	anti-parallel
Strand 4	F	71	76	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	15	first strand
Strand 2	F	126	129	parallel
Strand 3	F	95	98	anti-parallel
Strand 4	F	38	42	anti-parallel
Strand 5	F	48	53	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	141	first strand
Strand 2	F	155	162	anti-parallel
Strand 3	F	193	199	anti-parallel
Strand 4	F	180	182	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	141	first strand
Strand 2	F	155	162	anti-parallel
Strand 3	F	193	199	anti-parallel
Strand 4	F	186	187	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	171	first strand
Strand 2	F	212	217	anti-parallel
Strand 3	F	222	227	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F6H

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6H