Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F6I entry

There are 6 chains in PDB entry 8F6I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 8	PRO 293
A	PHE 9	GLU 292
E	SER 1	GLY 202
F	GLU 4	PRO 230
C	SER 1	GLY 202
D	VAL 5	PRO 230

There are 24 helices in PDB entry 8F6I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	8	37	Right-handed alpha
Helix 2	AA2	B	40	61	Right-handed alpha
Helix 3	AA3	B	79	103	Right-handed alpha
Helix 4	AA4	B	104	108	Right-handed 310
Helix 5	AA5	B	115	141	Right-handed alpha
Helix 6	AA6	B	147	175	Right-handed alpha
Helix 7	AA7	B	182	208	Right-handed alpha
Helix 8	AA8	B	213	226	Right-handed alpha
Helix 9	AA9	B	258	277	Right-handed alpha
Helix 10	AB1	A	10	34	Right-handed alpha
Helix 11	AB2	A	38	64	Right-handed alpha
Helix 12	AB3	A	79	105	Right-handed alpha
Helix 13	AB4	A	115	140	Right-handed alpha
Helix 14	AB5	A	150	176	Right-handed alpha
Helix 15	AB6	A	179	208	Right-handed alpha
Helix 16	AB7	A	213	225	Right-handed alpha
Helix 17	AB8	A	258	277	Right-handed alpha
Helix 18	AB9	E	123	129	Right-handed alpha
Helix 19	AC1	E	185	189	Right-handed alpha
Helix 20	AC2	F	31	35	Right-handed 310
Helix 21	AC3	C	123	128	Right-handed alpha
Helix 22	AC4	C	185	189	Right-handed alpha
Helix 23	AC5	D	65	68	Right-handed 310
Helix 24	AC6	D	171	175	Right-handed 310

There are 22 sheets in PDB entry 8F6I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	241	first strand
Strand 2	B	244	253	anti-parallel
Strand 3	B	280	288	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	241	first strand
Strand 2	A	244	254	anti-parallel
Strand 3	A	280	289	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	8	first strand
Strand 2	E	20	25	anti-parallel
Strand 3	E	71	76	anti-parallel
Strand 4	E	63	66	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	14	first strand
Strand 2	E	105	108	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	50	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	E	86	90	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	120	first strand
Strand 2	E	131	141	anti-parallel
Strand 3	E	175	184	anti-parallel
Strand 4	E	162	165	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	148	first strand
Strand 2	E	198	199	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	10	first strand
Strand 2	F	20	26	anti-parallel
Strand 3	F	81	87	anti-parallel
Strand 4	F	71	76	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	14	first strand
Strand 2	F	125	128	parallel
Strand 3	F	95	102	anti-parallel
Strand 4	F	37	42	anti-parallel
Strand 5	F	48	54	anti-parallel
Strand 6	F	61	63	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	14	first strand
Strand 2	F	125	128	parallel
Strand 3	F	95	102	anti-parallel
Strand 4	F	118	121	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	141	first strand
Strand 2	F	155	162	anti-parallel
Strand 3	F	192	199	anti-parallel
Strand 4	F	180	182	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	141	first strand
Strand 2	F	155	162	anti-parallel
Strand 3	F	192	199	anti-parallel
Strand 4	F	186	188	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	171	first strand
Strand 2	F	212	217	anti-parallel
Strand 3	F	224	227	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	20	26	anti-parallel
Strand 3	C	71	76	anti-parallel
Strand 4	C	66	68	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	104	108	parallel
Strand 3	C	86	94	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	50	anti-parallel
Strand 6	C	54	55	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	104	108	parallel
Strand 3	C	86	94	anti-parallel
Strand 4	C	97	100	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	120	first strand
Strand 2	C	131	141	anti-parallel
Strand 3	C	175	184	anti-parallel
Strand 4	C	161	165	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	10	first strand
Strand 2	D	20	26	anti-parallel
Strand 3	D	81	87	anti-parallel
Strand 4	D	73	76	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	63	first strand
Strand 2	D	48	53	anti-parallel
Strand 3	D	37	42	anti-parallel
Strand 4	D	95	102	anti-parallel
Strand 5	D	118	121	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	63	first strand
Strand 2	D	48	53	anti-parallel
Strand 3	D	37	42	anti-parallel
Strand 4	D	95	102	anti-parallel
Strand 5	D	125	127	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	141	first strand
Strand 2	D	155	162	anti-parallel
Strand 3	D	193	199	anti-parallel
Strand 4	D	186	187	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	169	first strand
Strand 2	D	212	217	anti-parallel
Strand 3	D	222	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F6I

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6I