Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F6J entry

There are 6 chains in PDB entry 8F6J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 11	GLU 292
E	SER 1	GLY 202
F	GLU 4	PRO 230
A	VAL 11	GLU 292
C	SER 1	GLY 202
D	GLU 4	PRO 230

There are 31 helices in PDB entry 8F6J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	12	34	Right-handed alpha
Helix 2	AA2	B	38	40	Right-handed 310
Helix 3	AA3	B	41	67	Right-handed alpha
Helix 4	AA4	B	79	109	Right-handed alpha
Helix 5	AA5	B	116	142	Right-handed alpha
Helix 6	AA6	B	146	149	Right-handed 310
Helix 7	AA7	B	150	174	Right-handed alpha
Helix 8	AA8	B	175	177	Right-handed 310
Helix 9	AA9	B	178	208	Right-handed alpha
Helix 10	AB1	B	214	225	Right-handed alpha
Helix 11	AB2	B	258	275	Right-handed alpha
Helix 12	AB3	E	123	129	Right-handed 310
Helix 13	AB4	E	184	188	Right-handed 310
Helix 14	AB5	F	90	94	Right-handed 310
Helix 15	AB6	F	173	175	Right-handed 310
Helix 16	AB7	A	12	34	Right-handed alpha
Helix 17	AB8	A	38	40	Right-handed 310
Helix 18	AB9	A	41	67	Right-handed alpha
Helix 19	AC1	A	79	103	Right-handed alpha
Helix 20	AC2	A	104	109	Right-handed alpha
Helix 21	AC3	A	116	141	Right-handed alpha
Helix 22	AC4	A	146	149	Right-handed 310
Helix 23	AC5	A	150	175	Right-handed alpha
Helix 24	AC6	A	177	208	Right-handed alpha
Helix 25	AC7	A	214	225	Right-handed alpha
Helix 26	AC8	A	258	275	Right-handed alpha
Helix 27	AC9	C	80	84	Right-handed 310
Helix 28	AD1	C	123	129	Right-handed 310
Helix 29	AD2	C	184	189	Right-handed alpha
Helix 30	AD3	D	90	94	Right-handed 310
Helix 31	AD4	D	173	175	Right-handed 310

There are 24 sheets in PDB entry 8F6J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	240	first strand
Strand 2	B	245	251	anti-parallel
Strand 3	B	281	286	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	8	first strand
Strand 2	E	20	26	anti-parallel
Strand 3	E	71	76	anti-parallel
Strand 4	E	64	68	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	14	first strand
Strand 2	E	106	108	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	49	first strand
Strand 2	E	36	39	anti-parallel
Strand 3	E	86	88	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	94	first strand
Strand 2	E	97	99	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	120	first strand
Strand 2	E	132	141	anti-parallel
Strand 3	E	175	183	anti-parallel
Strand 4	E	161	165	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	10	first strand
Strand 2	F	20	28	anti-parallel
Strand 3	F	81	87	anti-parallel
Strand 4	F	71	76	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	61	63	first strand
Strand 2	F	48	55	anti-parallel
Strand 3	F	36	42	anti-parallel
Strand 4	F	96	100	anti-parallel
Strand 5	F	125	126	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	107	first strand
Strand 2	F	113	114	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	141	first strand
Strand 2	F	155	162	anti-parallel
Strand 3	F	193	199	anti-parallel
Strand 4	F	181	182	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	141	first strand
Strand 2	F	155	162	anti-parallel
Strand 3	F	193	199	anti-parallel
Strand 4	F	186	187	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	171	first strand
Strand 2	F	212	217	anti-parallel
Strand 3	F	222	227	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	240	first strand
Strand 2	A	245	251	anti-parallel
Strand 3	A	281	286	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	20	26	anti-parallel
Strand 3	C	71	76	anti-parallel
Strand 4	C	64	68	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	106	108	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	49	first strand
Strand 2	C	36	39	anti-parallel
Strand 3	C	86	88	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	94	first strand
Strand 2	C	97	99	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	120	first strand
Strand 2	C	132	141	anti-parallel
Strand 3	C	175	183	anti-parallel
Strand 4	C	161	165	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	10	first strand
Strand 2	D	20	28	anti-parallel
Strand 3	D	81	87	anti-parallel
Strand 4	D	71	76	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	63	first strand
Strand 2	D	48	55	anti-parallel
Strand 3	D	36	42	anti-parallel
Strand 4	D	96	100	anti-parallel
Strand 5	D	125	126	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	107	first strand
Strand 2	D	113	114	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	141	first strand
Strand 2	D	155	162	anti-parallel
Strand 3	D	193	199	anti-parallel
Strand 4	D	181	182	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	141	first strand
Strand 2	D	155	162	anti-parallel
Strand 3	D	193	199	anti-parallel
Strand 4	D	186	187	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	171	first strand
Strand 2	D	212	217	anti-parallel
Strand 3	D	222	227	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F6J

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6J