Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F6K entry

There are 4 chains in PDB entry 8F6K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 11VAL 289
B
 SER 5VAL 291
C
 VAL 11VAL 289
D
 SER 5VAL 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8F6K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 34Right-handed alpha
Helix 2
AA2
A
38 63Right-handed alpha
Helix 3
AA3
A
80 109Right-handed alpha
Helix 4
AA4
A
115 142Right-handed alpha
Helix 5
AA5
A
147 175Right-handed alpha
Helix 6
AA6
A
177 179Right-handed 310
Helix 7
AA7
A
180 208Right-handed alpha
Helix 8
AA8
A
213 224Right-handed alpha
Helix 9
AA9
A
260 275Right-handed alpha
Helix 10
AB1
B
15 23Right-handed alpha
Helix 11
AB2
B
24 35Right-handed alpha
Helix 12
AB3
B
38 65Right-handed alpha
Helix 13
AB4
B
80 109Right-handed alpha
Helix 14
AB5
B
117 140Right-handed alpha
Helix 15
AB6
B
141 144Right-handed 310
Helix 16
AB7
B
149 176Right-handed alpha
Helix 17
AB8
B
177 217Right-handed alpha
Helix 18
AB9
B
258 269Right-handed alpha
Helix 19
AC1
C
12 34Right-handed alpha
Helix 20
AC2
C
38 63Right-handed alpha
Helix 21
AC3
C
80 109Right-handed alpha
Helix 22
AC4
C
115 142Right-handed alpha
Helix 23
AC5
C
147 175Right-handed alpha
Helix 24
AC6
C
177 179Right-handed 310
Helix 25
AC7
C
180 208Right-handed alpha
Helix 26
AC8
C
213 224Right-handed alpha
Helix 27
AC9
C
260 275Right-handed alpha
Helix 28
AD1
D
15 23Right-handed alpha
Helix 29
AD2
D
24 35Right-handed alpha
Helix 30
AD3
D
38 65Right-handed alpha
Helix 31
AD4
D
80 109Right-handed alpha
Helix 32
AD5
D
117 140Right-handed alpha
Helix 33
AD6
D
141 144Right-handed 310
Helix 34
AD7
D
149 176Right-handed alpha
Helix 35
AD8
D
177 217Right-handed alpha
Helix 36
AD9
D
258 269Right-handed alpha
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There are 6 sheets in PDB entry 8F6K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 241first strand
Strand 2
A
244 246anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 246first strand
Strand 2
B
279 281parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 254first strand
Strand 2
B
287 289parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
239 240first strand
Strand 2
C
245 246anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
244 246first strand
Strand 2
D
279 281parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
252 254first strand
Strand 2
D
287 289parallel
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