Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F6U entry

There are 4 chains in PDB entry 8F6U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ALA 25	ARG 317
B	LEU 6	SER 129
C	GLU 26	GLY 318
A	VAL 4	SER 129

There are 39 helices in PDB entry 8F6U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	66	71	Right-handed 310
Helix 2	AA2	D	73	78	Right-handed alpha
Helix 3	AA3	D	102	118	Right-handed alpha
Helix 4	AA4	D	129	134	Right-handed alpha
Helix 5	AA5	D	135	142	Right-handed alpha
Helix 6	AA6	D	158	164	Right-handed 310
Helix 7	AA7	D	176	183	Right-handed alpha
Helix 8	AA8	D	186	193	Right-handed alpha
Helix 9	AA9	D	195	207	Right-handed alpha
Helix 10	AB1	D	210	214	Right-handed 310
Helix 11	AB2	D	215	227	Right-handed alpha
Helix 12	AB3	D	228	241	Right-handed alpha
Helix 13	AB4	D	241	253	Right-handed alpha
Helix 14	AB5	D	274	282	Right-handed alpha
Helix 15	AB6	D	298	303	Right-handed alpha
Helix 16	AB7	D	303	317	Right-handed alpha
Helix 17	AB8	B	27	33	Right-handed alpha
Helix 18	AB9	B	92	96	Right-handed 310
Helix 19	AC1	B	106	113	Right-handed alpha
Helix 20	AC2	C	66	71	Right-handed 310
Helix 21	AC3	C	73	78	Right-handed alpha
Helix 22	AC4	C	102	118	Right-handed alpha
Helix 23	AC5	C	129	134	Right-handed alpha
Helix 24	AC6	C	135	142	Right-handed alpha
Helix 25	AC7	C	158	164	Right-handed 310
Helix 26	AC8	C	176	183	Right-handed alpha
Helix 27	AC9	C	186	193	Right-handed alpha
Helix 28	AD1	C	195	207	Right-handed alpha
Helix 29	AD2	C	210	214	Right-handed 310
Helix 30	AD3	C	215	227	Right-handed alpha
Helix 31	AD4	C	228	241	Right-handed alpha
Helix 32	AD5	C	241	253	Right-handed alpha
Helix 33	AD6	C	274	281	Right-handed alpha
Helix 34	AD7	C	298	303	Right-handed alpha
Helix 35	AD8	C	303	316	Right-handed alpha
Helix 36	AD9	A	27	33	Right-handed alpha
Helix 37	AE1	A	79	81	Right-handed 310
Helix 38	AE2	A	92	96	Right-handed 310
Helix 39	AE3	A	106	113	Right-handed alpha

There are 8 sheets in PDB entry 8F6U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	41	first strand
Strand 2	D	44	52	anti-parallel
Strand 3	D	82	86	anti-parallel
Strand 4	D	56	60	parallel
Strand 5	D	123	128	parallel
Strand 6	D	146	152	parallel
Strand 7	D	261	266	parallel
Strand 8	D	287	292	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	168	first strand
Strand 2	D	171	172	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	9	first strand
Strand 2	B	20	25	anti-parallel
Strand 3	B	83	88	anti-parallel
Strand 4	B	73	78	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	15	first strand
Strand 2	B	123	128	parallel
Strand 3	B	97	104	anti-parallel
Strand 4	B	35	41	anti-parallel
Strand 5	B	48	53	anti-parallel
Strand 6	B	63	65	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	41	first strand
Strand 2	C	44	52	anti-parallel
Strand 3	C	82	86	anti-parallel
Strand 4	C	56	60	parallel
Strand 5	C	123	128	parallel
Strand 6	C	146	152	parallel
Strand 7	C	261	266	parallel
Strand 8	C	287	292	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	171	172	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	9	first strand
Strand 2	A	20	25	anti-parallel
Strand 3	A	83	88	anti-parallel
Strand 4	A	73	78	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	123	128	parallel
Strand 3	A	97	104	anti-parallel
Strand 4	A	35	41	anti-parallel
Strand 5	A	48	53	anti-parallel
Strand 6	A	63	65	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F6U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6U