Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F6V entry

There are 4 chains in PDB entry 8F6V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 4	SER 126
D	GLU 26	ARG 319
B	VAL 4	VAL 125
C	GLU 26	ARG 319

There are 31 helices in PDB entry 8F6V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	87	91	Right-handed 310
Helix 2	AA2	D	66	71	Right-handed 310
Helix 3	AA3	D	73	79	Right-handed alpha
Helix 4	AA4	D	102	116	Right-handed alpha
Helix 5	AA5	D	129	134	Right-handed alpha
Helix 6	AA6	D	135	142	Right-handed alpha
Helix 7	AA7	D	158	164	Right-handed 310
Helix 8	AA8	D	176	183	Right-handed alpha
Helix 9	AA9	D	186	193	Right-handed alpha
Helix 10	AB1	D	195	207	Right-handed alpha
Helix 11	AB2	D	215	228	Right-handed alpha
Helix 12	AB3	D	228	241	Right-handed alpha
Helix 13	AB4	D	241	253	Right-handed alpha
Helix 14	AB5	D	274	281	Right-handed alpha
Helix 15	AB6	D	298	303	Right-handed alpha
Helix 16	AB7	D	303	317	Right-handed alpha
Helix 17	AB8	B	87	91	Right-handed 310
Helix 18	AB9	C	66	71	Right-handed 310
Helix 19	AC1	C	72	79	Right-handed alpha
Helix 20	AC2	C	102	118	Right-handed alpha
Helix 21	AC3	C	129	142	Right-handed alpha
Helix 22	AC4	C	158	164	Right-handed 310
Helix 23	AC5	C	176	183	Right-handed alpha
Helix 24	AC6	C	186	193	Right-handed alpha
Helix 25	AC7	C	195	207	Right-handed alpha
Helix 26	AC8	C	215	228	Right-handed alpha
Helix 27	AC9	C	228	241	Right-handed alpha
Helix 28	AD1	C	241	253	Right-handed alpha
Helix 29	AD2	C	274	281	Right-handed alpha
Helix 30	AD3	C	298	303	Right-handed alpha
Helix 31	AD4	C	303	317	Right-handed alpha

There are 8 sheets in PDB entry 8F6V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	9	first strand
Strand 2	A	20	26	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	A	121	125	parallel
Strand 3	A	92	103	anti-parallel
Strand 4	A	107	111	anti-parallel

Back to list of sheets
Back to top of page

There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	47	52	anti-parallel
Strand 3	A	35	40	anti-parallel
Strand 4	A	92	103	anti-parallel
Strand 5	C	286	292	parallel
Strand 6	C	261	266	parallel
Strand 7	C	146	152	parallel
Strand 8	C	123	128	parallel
Strand 9	C	56	60	parallel
Strand 10	C	82	86	parallel
Strand 11	C	44	51	anti-parallel
Strand 12	C	34	41	anti-parallel

Back to list of sheets
Back to top of page

There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	41	first strand
Strand 2	D	44	52	anti-parallel
Strand 3	D	82	86	anti-parallel
Strand 4	D	56	60	parallel
Strand 5	D	123	128	parallel
Strand 6	D	146	152	parallel
Strand 7	D	261	266	parallel
Strand 8	D	286	292	parallel
Strand 9	B	92	103	parallel
Strand 10	B	35	40	anti-parallel
Strand 11	B	46	52	anti-parallel
Strand 12	B	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	121	124	parallel
Strand 3	B	92	103	anti-parallel
Strand 4	B	107	111	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	168	first strand
Strand 2	D	171	172	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	9	first strand
Strand 2	B	20	26	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	171	172	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F6V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6V