Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F6X entry

There are 6 chains in PDB entry 8F6X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 19	GLU 465
B	LEU 19	GLU 465
C	LEU 19	GLU 465
D	VAL 2	LEU 254
E	VAL 2	LEU 254
F	VAL 2	LEU 254

There are 39 helices in PDB entry 8F6X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	84	Right-handed alpha
Helix 2	AA2	A	94	130	Right-handed alpha
Helix 3	AA3	A	130	144	Right-handed alpha
Helix 4	AA4	A	164	172	Right-handed alpha
Helix 5	AA5	A	172	177	Right-handed alpha
Helix 6	AA6	A	187	197	Right-handed alpha
Helix 7	AA7	A	197	210	Right-handed alpha
Helix 8	AA8	A	223	234	Right-handed alpha
Helix 9	AA9	A	237	247	Right-handed alpha
Helix 10	AB1	A	247	255	Right-handed alpha
Helix 11	AB2	A	344	352	Right-handed 310
Helix 12	AB3	A	442	446	Right-handed 310
Helix 13	AB4	B	67	81	Right-handed alpha
Helix 14	AB5	B	94	130	Right-handed alpha
Helix 15	AB6	B	130	144	Right-handed alpha
Helix 16	AB7	B	164	172	Right-handed alpha
Helix 17	AB8	B	172	177	Right-handed alpha
Helix 18	AB9	B	187	197	Right-handed alpha
Helix 19	AC1	B	197	210	Right-handed alpha
Helix 20	AC2	B	223	234	Right-handed alpha
Helix 21	AC3	B	237	247	Right-handed alpha
Helix 22	AC4	B	247	255	Right-handed alpha
Helix 23	AC5	B	344	352	Right-handed 310
Helix 24	AC6	B	442	446	Right-handed 310
Helix 25	AC7	C	67	84	Right-handed alpha
Helix 26	AC8	C	94	130	Right-handed alpha
Helix 27	AC9	C	130	144	Right-handed alpha
Helix 28	AD1	C	164	172	Right-handed alpha
Helix 29	AD2	C	173	177	Right-handed 310
Helix 30	AD3	C	187	197	Right-handed alpha
Helix 31	AD4	C	197	210	Right-handed alpha
Helix 32	AD5	C	223	234	Right-handed alpha
Helix 33	AD6	C	237	246	Right-handed alpha
Helix 34	AD7	C	247	255	Right-handed alpha
Helix 35	AD8	C	344	352	Right-handed 310
Helix 36	AD9	C	442	446	Right-handed 310
Helix 37	AE1	D	225	229	Right-handed 310
Helix 38	AE2	E	87	91	Right-handed 310
Helix 39	AE3	E	225	229	Right-handed 310

There are 33 sheets in PDB entry 8F6X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	329	first strand
Strand 2	A	332	336	anti-parallel
Strand 3	A	29	40	parallel
Strand 4	A	278	288	anti-parallel
Strand 5	A	308	312	anti-parallel
Strand 6	A	317	320	anti-parallel
Strand 7	A	341	342	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	329	first strand
Strand 2	A	332	336	anti-parallel
Strand 3	A	29	40	parallel
Strand 4	A	20	24	anti-parallel
Strand 5	A	433	437	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	150	first strand
Strand 2	A	156	161	anti-parallel
Strand 3	A	42	51	parallel
Strand 4	A	266	275	anti-parallel
Strand 5	A	256	263	anti-parallel
Strand 6	A	213	214	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	298	304	anti-parallel
Strand 3	A	363	366	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	374	first strand
Strand 2	A	380	383	anti-parallel
Strand 3	A	408	410	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	402	first strand
Strand 2	A	390	393	anti-parallel
Strand 3	A	417	420	anti-parallel
Strand 4	A	423	426	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	329	first strand
Strand 2	B	332	336	anti-parallel
Strand 3	B	29	40	parallel
Strand 4	B	278	288	anti-parallel
Strand 5	B	308	312	anti-parallel
Strand 6	B	317	320	anti-parallel
Strand 7	B	341	342	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	329	first strand
Strand 2	B	332	336	anti-parallel
Strand 3	B	29	40	parallel
Strand 4	B	20	24	anti-parallel
Strand 5	B	433	437	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	150	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	42	51	parallel
Strand 4	B	266	275	anti-parallel
Strand 5	B	256	263	anti-parallel
Strand 6	B	213	214	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	295	first strand
Strand 2	B	298	304	anti-parallel
Strand 3	B	363	366	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	374	first strand
Strand 2	B	380	383	anti-parallel
Strand 3	B	408	410	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	402	first strand
Strand 2	B	390	394	anti-parallel
Strand 3	B	417	420	anti-parallel
Strand 4	B	423	426	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	329	first strand
Strand 2	C	332	336	anti-parallel
Strand 3	C	29	40	parallel
Strand 4	C	278	288	anti-parallel
Strand 5	C	308	312	anti-parallel
Strand 6	C	317	320	anti-parallel
Strand 7	C	341	342	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	329	first strand
Strand 2	C	332	336	anti-parallel
Strand 3	C	29	40	parallel
Strand 4	C	20	24	anti-parallel
Strand 5	C	433	437	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	150	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	42	51	parallel
Strand 4	C	266	275	anti-parallel
Strand 5	C	256	263	anti-parallel
Strand 6	C	213	214	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	295	first strand
Strand 2	C	298	303	anti-parallel
Strand 3	C	362	366	anti-parallel
Strand 4	C	458	459	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	374	first strand
Strand 2	C	380	383	anti-parallel
Strand 3	C	408	410	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	402	first strand
Strand 2	C	390	393	anti-parallel
Strand 3	C	417	420	anti-parallel
Strand 4	C	423	426	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	17	25	anti-parallel
Strand 3	D	78	84	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	51	first strand
Strand 2	D	33	39	anti-parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	118	120	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	150	first strand
Strand 2	D	162	167	anti-parallel
Strand 3	D	216	221	anti-parallel
Strand 4	D	208	213	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	249	251	parallel
Strand 3	D	231	236	anti-parallel
Strand 4	D	180	184	anti-parallel
Strand 5	D	191	194	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	249	251	parallel
Strand 3	D	231	236	anti-parallel
Strand 4	D	244	245	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	4	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	51	first strand
Strand 2	E	33	39	anti-parallel
Strand 3	E	92	100	anti-parallel
Strand 4	E	110	114	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	51	first strand
Strand 2	E	33	39	anti-parallel
Strand 3	E	92	100	anti-parallel
Strand 4	E	118	120	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	150	first strand
Strand 2	E	164	167	anti-parallel
Strand 3	E	216	221	anti-parallel
Strand 4	E	208	213	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	156	first strand
Strand 2	E	249	253	parallel
Strand 3	E	231	235	anti-parallel
Strand 4	E	180	184	anti-parallel
Strand 5	E	191	194	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	17	25	anti-parallel
Strand 3	F	78	84	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	118	122	parallel
Strand 3	F	92	97	anti-parallel
Strand 4	F	35	39	anti-parallel
Strand 5	F	45	50	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	154	first strand
Strand 2	F	249	251	parallel
Strand 3	F	231	236	anti-parallel
Strand 4	F	180	184	anti-parallel
Strand 5	F	191	194	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	154	first strand
Strand 2	F	249	251	parallel
Strand 3	F	231	236	anti-parallel
Strand 4	F	244	245	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	165	first strand
Strand 2	F	218	221	anti-parallel
Strand 3	F	208	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F6X

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6X