Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F6Y entry

There are 5 chains in PDB entry 8F6Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	PHE 426
B	VAL 1	ARG 499
C	SER 1	ALA 469
D	SER 1	PHE 426
E	GLU 1	PRO 489

There are 58 helices in PDB entry 8F6Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	12	Right-handed alpha
Helix 2	AA2	A	63	66	Right-handed 310
Helix 3	AA3	A	68	73	Right-handed 310
Helix 4	AA4	A	83	85	Right-handed 310
Helix 5	AA5	A	212	218	Right-handed alpha
Helix 6	AA6	A	218	227	Right-handed alpha
Helix 7	AA7	A	230	235	Right-handed alpha
Helix 8	AA8	A	236	240	Right-handed 310
Helix 9	AA9	A	241	262	Right-handed alpha
Helix 10	AB1	A	272	300	Right-handed alpha
Helix 11	AB2	A	309	319	Right-handed alpha
Helix 12	AB3	A	319	324	Right-handed alpha
Helix 13	AB4	A	371	426	Right-handed alpha
Helix 14	AB5	B	2	13	Right-handed alpha
Helix 15	AB6	B	65	68	Right-handed 310
Helix 16	AB7	B	225	232	Right-handed alpha
Helix 17	AB8	B	232	246	Right-handed alpha
Helix 18	AB9	B	247	249	Right-handed 310
Helix 19	AC1	B	255	277	Right-handed alpha
Helix 20	AC2	B	286	314	Right-handed alpha
Helix 21	AC3	B	323	332	Right-handed alpha
Helix 22	AC4	B	332	338	Right-handed alpha
Helix 23	AC5	B	417	476	Right-handed alpha
Helix 24	AC6	C	2	12	Right-handed alpha
Helix 25	AC7	C	68	73	Right-handed 310
Helix 26	AC8	C	81	85	Right-handed 310
Helix 27	AC9	C	176	180	Right-handed 310
Helix 28	AD1	C	217	238	Right-handed alpha
Helix 29	AD2	C	242	246	Right-handed 310
Helix 30	AD3	C	247	267	Right-handed alpha
Helix 31	AD4	C	278	306	Right-handed alpha
Helix 32	AD5	C	315	324	Right-handed alpha
Helix 33	AD6	C	325	331	Right-handed alpha
Helix 34	AD7	C	399	460	Right-handed alpha
Helix 35	AD8	D	2	12	Right-handed alpha
Helix 36	AD9	D	63	66	Right-handed 310
Helix 37	AE1	D	68	73	Right-handed 310
Helix 38	AE2	D	83	85	Right-handed 310
Helix 39	AE3	D	211	218	Right-handed alpha
Helix 40	AE4	D	218	229	Right-handed alpha
Helix 41	AE5	D	230	235	Right-handed 310
Helix 42	AE6	D	236	240	Right-handed 310
Helix 43	AE7	D	241	262	Right-handed alpha
Helix 44	AE8	D	272	300	Right-handed alpha
Helix 45	AE9	D	309	318	Right-handed alpha
Helix 46	AF1	D	319	324	Right-handed alpha
Helix 47	AF2	D	371	426	Right-handed alpha
Helix 48	AF3	E	3	13	Right-handed alpha
Helix 49	AF4	E	68	73	Right-handed 310
Helix 50	AF5	E	83	85	Right-handed 310
Helix 51	AF6	E	219	226	Right-handed alpha
Helix 52	AF7	E	226	235	Right-handed alpha
Helix 53	AF8	E	236	242	Right-handed 310
Helix 54	AF9	E	250	272	Right-handed alpha
Helix 55	AG1	E	281	309	Right-handed alpha
Helix 56	AG2	E	318	327	Right-handed alpha
Helix 57	AG3	E	327	333	Right-handed alpha
Helix 58	AG4	E	412	472	Right-handed alpha

There are 20 sheets in PDB entry 8F6Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	81	first strand
Strand 2	A	107	111	anti-parallel
Strand 3	A	115	118	anti-parallel
Strand 4	A	49	61	anti-parallel
Strand 5	A	121	127	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	81	first strand
Strand 2	A	107	111	anti-parallel
Strand 3	A	115	118	anti-parallel
Strand 4	A	49	61	anti-parallel
Strand 5	A	29	44	anti-parallel
Strand 6	A	156	160	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	139	148	anti-parallel
Strand 3	A	198	209	anti-parallel
Strand 4	A	176	188	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	110	112	anti-parallel
Strand 3	B	117	120	anti-parallel
Strand 4	B	51	63	anti-parallel
Strand 5	B	123	129	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	110	112	anti-parallel
Strand 3	B	117	120	anti-parallel
Strand 4	B	51	63	anti-parallel
Strand 5	B	31	46	anti-parallel
Strand 6	B	158	162	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	141	150	anti-parallel
Strand 3	B	213	223	anti-parallel
Strand 4	B	190	194	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	141	150	anti-parallel
Strand 3	B	213	223	anti-parallel
Strand 4	B	197	201	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	166	first strand
Strand 2	B	171	173	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	80	first strand
Strand 2	C	108	111	anti-parallel
Strand 3	C	115	118	anti-parallel
Strand 4	C	49	61	anti-parallel
Strand 5	C	121	127	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	80	first strand
Strand 2	C	108	111	anti-parallel
Strand 3	C	115	118	anti-parallel
Strand 4	C	49	61	anti-parallel
Strand 5	C	29	44	anti-parallel
Strand 6	C	156	160	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	139	148	anti-parallel
Strand 3	C	206	215	anti-parallel
Strand 4	C	186	190	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	139	148	anti-parallel
Strand 3	C	206	215	anti-parallel
Strand 4	C	193	196	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	81	first strand
Strand 2	D	107	111	anti-parallel
Strand 3	D	115	118	anti-parallel
Strand 4	D	49	61	anti-parallel
Strand 5	D	121	127	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	81	first strand
Strand 2	D	107	111	anti-parallel
Strand 3	D	115	118	anti-parallel
Strand 4	D	49	61	anti-parallel
Strand 5	D	29	44	anti-parallel
Strand 6	D	156	160	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	92	first strand
Strand 2	D	139	148	anti-parallel
Strand 3	D	198	209	anti-parallel
Strand 4	D	176	188	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	81	first strand
Strand 2	E	107	111	anti-parallel
Strand 3	E	115	118	anti-parallel
Strand 4	E	49	61	anti-parallel
Strand 5	E	29	44	anti-parallel
Strand 6	E	156	160	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	127	first strand
Strand 2	E	49	61	anti-parallel
Strand 3	E	29	44	anti-parallel
Strand 4	E	172	173	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	92	first strand
Strand 2	E	139	148	anti-parallel
Strand 3	E	207	217	anti-parallel
Strand 4	E	184	188	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	92	first strand
Strand 2	E	139	148	anti-parallel
Strand 3	E	207	217	anti-parallel
Strand 4	E	191	195	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	163	first strand
Strand 2	E	166	167	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F6Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6Y