Analysis of interatomic Contacts of Structural Units in PDB entry:
8F6Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F6Z entry

There are 5 chains in PDB entry 8F6Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 1PHE 426
B
ASN 2ARG 499
C
SER 1ALA 469
D
SER 1PHE 426
E
GLU 1PRO 489
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8F6Z. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
1 12Right-handed alpha
Helix 2
AA2
A
63 66Right-handed 310
Helix 3
AA3
A
68 73Right-handed 310
Helix 4
AA4
A
83 85Right-handed 310
Helix 5
AA5
A
212 218Right-handed alpha
Helix 6
AA6
A
218 235Right-handed alpha
Helix 7
AA7
A
236 240Right-handed 310
Helix 8
AA8
A
241 262Right-handed alpha
Helix 9
AA9
A
272 300Right-handed alpha
Helix 10
AB1
A
309 317Right-handed alpha
Helix 11
AB2
A
320 324Right-handed 310
Helix 12
AB3
A
371 426Right-handed alpha
Helix 13
AB4
B
3 13Right-handed alpha
Helix 14
AB5
B
225 232Right-handed alpha
Helix 15
AB6
B
232 246Right-handed alpha
Helix 16
AB7
B
247 249Right-handed 310
Helix 17
AB8
B
250 254Right-handed 310
Helix 18
AB9
B
255 276Right-handed alpha
Helix 19
AC1
B
286 314Right-handed alpha
Helix 20
AC2
B
323 332Right-handed alpha
Helix 21
AC3
B
332 338Right-handed alpha
Helix 22
AC4
B
417 478Right-handed alpha
Helix 23
AC5
C
2 12Right-handed alpha
Helix 24
AC6
C
68 73Right-handed 310
Helix 25
AC7
C
81 85Right-handed 310
Helix 26
AC8
C
177 180Right-handed 310
Helix 27
AC9
C
217 238Right-handed alpha
Helix 28
AD1
C
239 241Right-handed 310
Helix 29
AD2
C
242 246Right-handed 310
Helix 30
AD3
C
247 267Right-handed alpha
Helix 31
AD4
C
278 306Right-handed alpha
Helix 32
AD5
C
315 324Right-handed alpha
Helix 33
AD6
C
325 331Right-handed alpha
Helix 34
AD7
C
399 460Right-handed alpha
Helix 35
AD8
D
2 12Right-handed alpha
Helix 36
AD9
D
63 66Right-handed 310
Helix 37
AE1
D
68 73Right-handed 310
Helix 38
AE2
D
81 85Right-handed 310
Helix 39
AE3
D
211 218Right-handed alpha
Helix 40
AE4
D
218 230Right-handed alpha
Helix 41
AE5
D
231 235Right-handed 310
Helix 42
AE6
D
236 240Right-handed 310
Helix 43
AE7
D
241 262Right-handed alpha
Helix 44
AE8
D
272 300Right-handed alpha
Helix 45
AE9
D
309 317Right-handed alpha
Helix 46
AF1
D
319 323Right-handed 310
Helix 47
AF2
D
371 426Right-handed alpha
Helix 48
AF3
E
2 13Right-handed alpha
Helix 49
AF4
E
68 73Right-handed 310
Helix 50
AF5
E
83 85Right-handed 310
Helix 51
AF6
E
219 226Right-handed alpha
Helix 52
AF7
E
226 235Right-handed alpha
Helix 53
AF8
E
236 243Right-handed 310
Helix 54
AF9
E
250 271Right-handed alpha
Helix 55
AG1
E
281 309Right-handed alpha
Helix 56
AG2
E
318 328Right-handed alpha
Helix 57
AG3
E
412 472Right-handed alpha
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There are 20 sheets in PDB entry 8F6Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
77 81first strand
Strand 2
A
107 111anti-parallel
Strand 3
A
115 118anti-parallel
Strand 4
A
49 61anti-parallel
Strand 5
A
121 127anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
77 81first strand
Strand 2
A
107 111anti-parallel
Strand 3
A
115 118anti-parallel
Strand 4
A
49 61anti-parallel
Strand 5
A
29 44anti-parallel
Strand 6
A
156 160parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
90 92first strand
Strand 2
A
139 148anti-parallel
Strand 3
A
198 209anti-parallel
Strand 4
A
176 188anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
80 82first strand
Strand 2
B
110 112anti-parallel
Strand 3
B
115 120anti-parallel
Strand 4
B
51 68anti-parallel
Strand 5
B
31 46anti-parallel
Strand 6
B
158 162parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
123 129first strand
Strand 2
B
51 68anti-parallel
Strand 3
B
31 46anti-parallel
Strand 4
B
178 179parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
92 94first strand
Strand 2
B
141 150anti-parallel
Strand 3
B
213 223anti-parallel
Strand 4
B
190 194anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
92 94first strand
Strand 2
B
141 150anti-parallel
Strand 3
B
213 223anti-parallel
Strand 4
B
197 201anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
164 166first strand
Strand 2
B
171 173anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
77 80first strand
Strand 2
C
108 111anti-parallel
Strand 3
C
115 118anti-parallel
Strand 4
C
49 61anti-parallel
Strand 5
C
29 44anti-parallel
Strand 6
C
156 160parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
121 127first strand
Strand 2
C
49 61anti-parallel
Strand 3
C
29 44anti-parallel
Strand 4
C
174 175parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
90 92first strand
Strand 2
C
139 148anti-parallel
Strand 3
C
201 215anti-parallel
Strand 4
C
186 190anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
90 92first strand
Strand 2
C
139 148anti-parallel
Strand 3
C
201 215anti-parallel
Strand 4
C
193 198anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
77 80first strand
Strand 2
D
108 111anti-parallel
Strand 3
D
115 118anti-parallel
Strand 4
D
49 61anti-parallel
Strand 5
D
121 127anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
77 80first strand
Strand 2
D
108 111anti-parallel
Strand 3
D
115 118anti-parallel
Strand 4
D
49 61anti-parallel
Strand 5
D
29 44anti-parallel
Strand 6
D
156 160parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
90 92first strand
Strand 2
D
139 148anti-parallel
Strand 3
D
198 209anti-parallel
Strand 4
D
176 188anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
77 81first strand
Strand 2
E
107 111anti-parallel
Strand 3
E
113 118anti-parallel
Strand 4
E
49 66anti-parallel
Strand 5
E
121 127anti-parallel
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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
77 81first strand
Strand 2
E
107 111anti-parallel
Strand 3
E
113 118anti-parallel
Strand 4
E
49 66anti-parallel
Strand 5
E
29 44anti-parallel
Strand 6
E
156 160parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
90 92first strand
Strand 2
E
139 148anti-parallel
Strand 3
E
207 217anti-parallel
Strand 4
E
184 188anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
90 92first strand
Strand 2
E
139 148anti-parallel
Strand 3
E
207 217anti-parallel
Strand 4
E
191 195anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
162 163first strand
Strand 2
E
166 167anti-parallel
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