Analysis of interatomic Contacts of Structural Units in PDB entry:
8F71


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F71 entry

There are 2 chains in PDB entry 8F71 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 546SER 752
B
 ALA 549SER 752
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8F71. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
547 590Right-handed alpha
Helix 2
AA2
A
599 610Right-handed alpha
Helix 3
AA3
A
610 617Right-handed alpha
Helix 4
AA4
A
632 650Right-handed alpha
Helix 5
AA5
A
695 700Right-handed alpha
Helix 6
AA6
A
717 729Right-handed alpha
Helix 7
AA7
B
551 590Right-handed alpha
Helix 8
AA8
B
599 610Right-handed alpha
Helix 9
AA9
B
610 617Right-handed alpha
Helix 10
AB1
B
632 650Right-handed alpha
Helix 11
AB2
B
692 696Right-handed 310
Helix 12
AB3
B
697 701Right-handed 310
Helix 13
AB4
B
717 729Right-handed alpha
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There are 4 sheets in PDB entry 8F71. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 598first strand
Strand 2
A
628 631anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 623first strand
Strand 2
A
658 664parallel
Strand 3
A
680 686anti-parallel
Strand 4
A
742 749anti-parallel
Strand 5
A
733 738anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
595 598first strand
Strand 2
B
628 631anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
620 623first strand
Strand 2
B
658 665parallel
Strand 3
B
680 686anti-parallel
Strand 4
B
742 749anti-parallel
Strand 5
B
733 738anti-parallel
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