Analysis of interatomic Contacts of Structural Units in PDB entry:
8F72

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F72 entry

There are 2 chains in PDB entry 8F72 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	VAL 594
B	HIS 0	VAL 594

There are 56 helices in PDB entry 8F72. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	10	Right-handed 310
Helix 2	AA2	A	17	26	Right-handed alpha
Helix 3	AA3	A	31	51	Right-handed alpha
Helix 4	AA4	A	77	80	Right-handed 310
Helix 5	AA5	A	81	86	Right-handed alpha
Helix 6	AA6	A	164	167	Right-handed 310
Helix 7	AA7	A	193	201	Right-handed alpha
Helix 8	AA8	A	205	209	Right-handed 310
Helix 9	AA9	A	216	225	Right-handed alpha
Helix 10	AB1	A	228	233	Right-handed 310
Helix 11	AB2	A	234	237	Right-handed 310
Helix 12	AB3	A	254	262	Right-handed 310
Helix 13	AB4	A	317	320	Right-handed 310
Helix 14	AB5	A	337	341	Right-handed 310
Helix 15	AB6	A	364	396	Right-handed alpha
Helix 16	AB7	A	401	418	Right-handed alpha
Helix 17	AB8	A	437	446	Right-handed alpha
Helix 18	AB9	A	458	468	Right-handed alpha
Helix 19	AC1	A	469	475	Right-handed 310
Helix 20	AC2	A	478	485	Right-handed alpha
Helix 21	AC3	A	485	500	Right-handed alpha
Helix 22	AC4	A	504	515	Right-handed alpha
Helix 23	AC5	A	522	534	Right-handed alpha
Helix 24	AC6	A	537	549	Right-handed alpha
Helix 25	AC7	A	551	555	Right-handed 310
Helix 26	AC8	A	558	566	Right-handed alpha
Helix 27	AC9	A	567	579	Right-handed alpha
Helix 28	AD1	A	582	593	Right-handed alpha
Helix 29	AD2	B	5	9	Right-handed alpha
Helix 30	AD3	B	18	23	Right-handed alpha
Helix 31	AD4	B	31	44	Right-handed alpha
Helix 32	AD5	B	81	86	Right-handed alpha
Helix 33	AD6	B	165	167	Right-handed 310
Helix 34	AD7	B	193	201	Right-handed alpha
Helix 35	AD8	B	204	209	Right-handed 310
Helix 36	AD9	B	216	225	Right-handed alpha
Helix 37	AE1	B	228	233	Right-handed 310
Helix 38	AE2	B	234	237	Right-handed 310
Helix 39	AE3	B	254	262	Right-handed 310
Helix 40	AE4	B	316	321	Right-handed alpha
Helix 41	AE5	B	322	324	Right-handed 310
Helix 42	AE6	B	337	341	Right-handed 310
Helix 43	AE7	B	365	397	Right-handed alpha
Helix 44	AE8	B	401	418	Right-handed alpha
Helix 45	AE9	B	437	446	Right-handed alpha
Helix 46	AF1	B	458	468	Right-handed alpha
Helix 47	AF2	B	469	472	Right-handed 310
Helix 48	AF3	B	478	485	Right-handed alpha
Helix 49	AF4	B	485	499	Right-handed alpha
Helix 50	AF5	B	504	515	Right-handed alpha
Helix 51	AF6	B	522	536	Right-handed alpha
Helix 52	AF7	B	537	548	Right-handed alpha
Helix 53	AF8	B	551	555	Right-handed 310
Helix 54	AF9	B	558	566	Right-handed alpha
Helix 55	AG1	B	567	579	Right-handed alpha
Helix 56	AG2	B	582	592	Right-handed alpha

There are 13 sheets in PDB entry 8F72. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	15	first strand
Strand 2	A	63	66	anti-parallel
Strand 3	A	58	59	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	74	first strand
Strand 2	A	142	153	parallel
Strand 3	A	130	138	anti-parallel
Strand 4	A	176	183	anti-parallel
Strand 5	A	91	96	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	74	first strand
Strand 2	A	142	153	parallel
Strand 3	A	113	117	parallel
Strand 4	A	161	162	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	213	first strand
Strand 2	A	239	242	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	253	first strand
Strand 2	A	312	315	parallel
Strand 3	A	270	273	anti-parallel
Strand 4	A	298	305	parallel
Strand 5	A	283	287	anti-parallel
Strand 6	A	331	335	anti-parallel
Strand 7	A	248	253	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	360	first strand
Strand 2	A	422	423	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	88	89	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	15	first strand
Strand 2	B	63	66	anti-parallel
Strand 3	B	58	60	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	74	first strand
Strand 2	B	142	153	parallel
Strand 3	B	113	117	parallel
Strand 4	B	161	163	anti-parallel
Strand 5	B	101	103	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	96	first strand
Strand 2	B	176	184	anti-parallel
Strand 3	B	130	138	anti-parallel
Strand 4	B	142	153	anti-parallel
Strand 5	B	168	169	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	213	first strand
Strand 2	B	239	242	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	253	first strand
Strand 2	B	312	314	parallel
Strand 3	B	270	273	anti-parallel
Strand 4	B	298	305	parallel
Strand 5	B	283	287	anti-parallel
Strand 6	B	331	335	anti-parallel
Strand 7	B	248	253	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	360	first strand
Strand 2	B	422	423	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F72

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F72