Analysis of interatomic Contacts of Structural Units in PDB entry:
8F75

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F75 entry

There are 3 chains in PDB entry 8F75 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 402	GLU 808
B	LEU 402	GLU 808
F	LEU 400	ASP 803

There are 55 helices in PDB entry 8F75. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	402	411	Right-handed alpha
Helix 2	AA2	A	412	420	Right-handed alpha
Helix 3	AA3	A	439	444	Right-handed alpha
Helix 4	AA4	A	462	467	Right-handed 310
Helix 5	AA5	A	484	495	Right-handed alpha
Helix 6	AA6	A	536	542	Right-handed 310
Helix 7	AA7	A	559	566	Right-handed alpha
Helix 8	AA8	A	585	590	Right-handed 310
Helix 9	AA9	A	608	613	Right-handed alpha
Helix 10	AB1	A	629	638	Right-handed 310
Helix 11	AB2	A	655	661	Right-handed 310
Helix 12	AB3	A	680	684	Right-handed 310
Helix 13	AB4	A	701	706	Right-handed 310
Helix 14	AB5	A	724	730	Right-handed 310
Helix 15	AB6	A	747	753	Right-handed 310
Helix 16	AB7	A	770	776	Right-handed 310
Helix 17	AB8	A	787	793	Right-handed alpha
Helix 18	AB9	A	795	808	Right-handed alpha
Helix 19	AC1	B	403	411	Right-handed alpha
Helix 20	AC2	B	412	420	Right-handed alpha
Helix 21	AC3	B	440	445	Right-handed alpha
Helix 22	AC4	B	462	468	Right-handed 310
Helix 23	AC5	B	484	495	Right-handed alpha
Helix 24	AC6	B	503	508	Right-handed 310
Helix 25	AC7	B	559	566	Right-handed alpha
Helix 26	AC8	B	567	569	Right-handed 310
Helix 27	AC9	B	586	590	Right-handed 310
Helix 28	AD1	B	609	613	Right-handed 310
Helix 29	AD2	B	633	638	Right-handed 310
Helix 30	AD3	B	655	661	Right-handed 310
Helix 31	AD4	B	679	684	Right-handed 310
Helix 32	AD5	B	701	705	Right-handed 310
Helix 33	AD6	B	724	729	Right-handed alpha
Helix 34	AD7	B	747	752	Right-handed 310
Helix 35	AD8	B	770	776	Right-handed 310
Helix 36	AD9	B	787	792	Right-handed alpha
Helix 37	AE1	B	795	808	Right-handed alpha
Helix 38	AE2	F	401	409	Right-handed alpha
Helix 39	AE3	F	410	418	Right-handed alpha
Helix 40	AE4	F	460	466	Right-handed 310
Helix 41	AE5	F	482	493	Right-handed alpha
Helix 42	AE6	F	502	506	Right-handed 310
Helix 43	AE7	F	508	513	Right-handed 310
Helix 44	AE8	F	534	540	Right-handed 310
Helix 45	AE9	F	557	563	Right-handed alpha
Helix 46	AF1	F	582	587	Right-handed alpha
Helix 47	AF2	F	605	610	Right-handed alpha
Helix 48	AF3	F	629	636	Right-handed 310
Helix 49	AF4	F	653	659	Right-handed 310
Helix 50	AF5	F	676	682	Right-handed alpha
Helix 51	AF6	F	699	705	Right-handed 310
Helix 52	AF7	F	724	728	Right-handed 310
Helix 53	AF8	F	768	774	Right-handed 310
Helix 54	AF9	F	785	791	Right-handed alpha
Helix 55	AG1	F	793	802	Right-handed alpha

There are 9 sheets in PDB entry 8F75. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	422	first strand
Strand 2	A	428	433	anti-parallel
Strand 3	A	450	454	parallel
Strand 4	A	473	477	parallel
Strand 5	A	497	501	parallel
Strand 6	A	520	524	parallel
Strand 7	A	548	552	parallel
Strand 8	A	571	575	parallel
Strand 9	A	595	599	parallel
Strand 10	A	618	620	parallel
Strand 11	A	643	645	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	461	first strand
Strand 2	A	481	483	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	666	668	first strand
Strand 2	A	689	691	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	759	760	first strand
Strand 2	A	784	785	parallel

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There are 13 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	422	first strand
Strand 2	B	428	433	anti-parallel
Strand 3	B	450	454	parallel
Strand 4	B	473	477	parallel
Strand 5	B	497	501	parallel
Strand 6	B	520	524	parallel
Strand 7	B	548	552	parallel
Strand 8	B	571	575	parallel
Strand 9	B	595	599	parallel
Strand 10	B	618	620	parallel
Strand 11	B	643	645	parallel
Strand 12	B	666	668	parallel
Strand 13	B	689	691	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	461	first strand
Strand 2	B	481	483	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	714	first strand
Strand 2	B	735	737	parallel
Strand 3	B	758	760	parallel

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There are 17 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	419	420	first strand
Strand 2	F	426	431	anti-parallel
Strand 3	F	448	452	parallel
Strand 4	F	471	475	parallel
Strand 5	F	495	499	parallel
Strand 6	F	518	520	parallel
Strand 7	F	546	549	parallel
Strand 8	F	569	573	parallel
Strand 9	F	593	597	parallel
Strand 10	F	616	618	parallel
Strand 11	F	641	643	parallel
Strand 12	F	664	666	parallel
Strand 13	F	687	689	parallel
Strand 14	F	710	712	parallel
Strand 15	F	733	735	parallel
Strand 16	F	756	758	parallel
Strand 17	F	782	783	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	457	459	first strand
Strand 2	F	479	481	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F75

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F75