Analysis of interatomic Contacts of Structural Units in PDB entry:
8F76

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F76 entry

There are 5 chains in PDB entry 8F76 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 4	MET 305
N	GLN 1	VAL 126
X	ASN 14	LEU 394
Y	GLU 3	ASN 340
Z	ALA 7	ARG 62

There are 30 helices in PDB entry 8F76. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	48	Right-handed alpha
Helix 2	AA2	A	51	55	Right-handed 310
Helix 3	AA3	A	56	87	Right-handed alpha
Helix 4	AA4	A	93	127	Right-handed alpha
Helix 5	AA5	A	130	135	Right-handed alpha
Helix 6	AA6	A	136	156	Right-handed alpha
Helix 7	AA7	A	156	163	Right-handed alpha
Helix 8	AA8	A	183	187	Right-handed 310
Helix 9	AA9	A	191	225	Right-handed alpha
Helix 10	AB1	A	229	263	Right-handed alpha
Helix 11	AB2	A	268	281	Right-handed alpha
Helix 12	AB3	A	282	292	Right-handed alpha
Helix 13	AB4	A	295	305	Right-handed alpha
Helix 14	AB5	N	28	32	Right-handed 310
Helix 15	AB6	N	87	91	Right-handed 310
Helix 16	AB7	X	15	40	Right-handed alpha
Helix 17	AB8	X	52	58	Right-handed alpha
Helix 18	AB9	X	233	240	Right-handed 310
Helix 19	AC1	X	265	279	Right-handed alpha
Helix 20	AC2	X	280	283	Right-handed 310
Helix 21	AC3	X	293	303	Right-handed alpha
Helix 22	AC4	X	307	312	Right-handed alpha
Helix 23	AC5	X	313	318	Right-handed 310
Helix 24	AC6	X	331	351	Right-handed alpha
Helix 25	AC7	X	370	391	Right-handed alpha
Helix 26	AC8	Y	4	26	Right-handed alpha
Helix 27	AC9	Y	29	34	Right-handed alpha
Helix 28	AD1	Z	8	24	Right-handed alpha
Helix 29	AD2	Z	29	45	Right-handed alpha
Helix 30	AD3	Z	46	48	Right-handed 310

There are 11 sheets in PDB entry 8F76. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	90	92	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	58	60	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	34	39	anti-parallel
Strand 4	N	92	98	anti-parallel
Strand 5	N	122	124	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	207	214	first strand
Strand 2	X	217	224	anti-parallel
Strand 3	X	41	46	parallel
Strand 4	X	243	249	parallel
Strand 5	X	286	292	parallel
Strand 6	X	359	363	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	46	52	first strand
Strand 2	Y	335	340	anti-parallel
Strand 3	Y	327	331	anti-parallel
Strand 4	Y	315	320	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	58	63	first strand
Strand 2	Y	69	74	anti-parallel
Strand 3	Y	78	83	anti-parallel
Strand 4	Y	89	94	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	100	105	first strand
Strand 2	Y	111	116	anti-parallel
Strand 3	Y	120	125	anti-parallel
Strand 4	Y	134	140	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	146	151	first strand
Strand 2	Y	156	161	anti-parallel
Strand 3	Y	165	170	anti-parallel
Strand 4	Y	175	181	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	187	192	first strand
Strand 2	Y	198	203	anti-parallel
Strand 3	Y	207	212	anti-parallel
Strand 4	Y	218	223	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	229	234	first strand
Strand 2	Y	240	245	anti-parallel
Strand 3	Y	250	254	anti-parallel
Strand 4	Y	259	264	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	273	278	first strand
Strand 2	Y	284	289	anti-parallel
Strand 3	Y	294	298	anti-parallel
Strand 4	Y	304	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F76

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F76