Analysis of interatomic Contacts of Structural Units in PDB entry:
8F79

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F79 entry

There are 6 chains in PDB entry 8F79 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 15	GLU 808
B	PRO 15	GLU 808
C	PRO 15	GLU 808
D	PRO 15	ASN 408
E	PRO 15	GLU 808
F	ALA 16	ASP 803

There are170 helices in PDB entry 8F79. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	21	Right-handed 310
Helix 2	AA2	A	22	49	Right-handed alpha
Helix 3	AA3	A	102	117	Right-handed alpha
Helix 4	AA4	A	119	141	Right-handed alpha
Helix 5	AA5	A	146	165	Right-handed alpha
Helix 6	AA6	A	166	175	Right-handed alpha
Helix 7	AA7	A	233	255	Right-handed alpha
Helix 8	AA8	A	258	286	Right-handed alpha
Helix 9	AA9	A	287	289	Right-handed 310
Helix 10	AB1	A	315	346	Right-handed alpha
Helix 11	AB2	A	353	360	Right-handed alpha
Helix 12	AB3	A	370	383	Right-handed alpha
Helix 13	AB4	A	383	391	Right-handed alpha
Helix 14	AB5	A	392	394	Right-handed 310
Helix 15	AB6	A	395	411	Right-handed alpha
Helix 16	AB7	A	412	420	Right-handed alpha
Helix 17	AB8	A	439	445	Right-handed alpha
Helix 18	AB9	A	462	468	Right-handed 310
Helix 19	AC1	A	484	495	Right-handed alpha
Helix 20	AC2	A	509	515	Right-handed 310
Helix 21	AC3	A	535	542	Right-handed 310
Helix 22	AC4	A	559	566	Right-handed alpha
Helix 23	AC5	A	585	589	Right-handed 310
Helix 24	AC6	A	633	638	Right-handed 310
Helix 25	AC7	A	655	661	Right-handed 310
Helix 26	AC8	A	679	684	Right-handed 310
Helix 27	AC9	A	701	707	Right-handed 310
Helix 28	AD1	A	724	730	Right-handed alpha
Helix 29	AD2	A	747	753	Right-handed 310
Helix 30	AD3	A	770	776	Right-handed 310
Helix 31	AD4	A	787	793	Right-handed alpha
Helix 32	AD5	A	795	808	Right-handed alpha
Helix 33	AD6	B	17	21	Right-handed 310
Helix 34	AD7	B	22	50	Right-handed alpha
Helix 35	AD8	B	102	117	Right-handed alpha
Helix 36	AD9	B	119	146	Right-handed alpha
Helix 37	AE1	B	146	165	Right-handed alpha
Helix 38	AE2	B	167	175	Right-handed alpha
Helix 39	AE3	B	233	255	Right-handed alpha
Helix 40	AE4	B	258	286	Right-handed alpha
Helix 41	AE5	B	287	289	Right-handed 310
Helix 42	AE6	B	314	345	Right-handed alpha
Helix 43	AE7	B	353	360	Right-handed alpha
Helix 44	AE8	B	369	383	Right-handed alpha
Helix 45	AE9	B	383	391	Right-handed alpha
Helix 46	AF1	B	392	394	Right-handed 310
Helix 47	AF2	B	395	411	Right-handed alpha
Helix 48	AF3	B	412	419	Right-handed alpha
Helix 49	AF4	B	439	445	Right-handed alpha
Helix 50	AF5	B	462	467	Right-handed 310
Helix 51	AF6	B	484	495	Right-handed alpha
Helix 52	AF7	B	503	508	Right-handed 310
Helix 53	AF8	B	510	515	Right-handed alpha
Helix 54	AF9	B	535	543	Right-handed 310
Helix 55	AG1	B	559	566	Right-handed alpha
Helix 56	AG2	B	567	569	Right-handed 310
Helix 57	AG3	B	634	638	Right-handed 310
Helix 58	AG4	B	655	661	Right-handed 310
Helix 59	AG5	B	679	684	Right-handed 310
Helix 60	AG6	B	701	707	Right-handed 310
Helix 61	AG7	B	724	730	Right-handed alpha
Helix 62	AG8	B	747	752	Right-handed alpha
Helix 63	AG9	B	770	774	Right-handed 310
Helix 64	AH1	B	787	792	Right-handed alpha
Helix 65	AH2	B	795	808	Right-handed alpha
Helix 66	AH3	C	17	21	Right-handed 310
Helix 67	AH4	C	22	50	Right-handed alpha
Helix 68	AH5	C	102	117	Right-handed alpha
Helix 69	AH6	C	119	146	Right-handed alpha
Helix 70	AH7	C	146	165	Right-handed alpha
Helix 71	AH8	C	167	175	Right-handed alpha
Helix 72	AH9	C	233	255	Right-handed alpha
Helix 73	AI1	C	258	286	Right-handed alpha
Helix 74	AI2	C	287	289	Right-handed 310
Helix 75	AI3	C	315	345	Right-handed alpha
Helix 76	AI4	C	353	360	Right-handed alpha
Helix 77	AI5	C	370	383	Right-handed alpha
Helix 78	AI6	C	383	391	Right-handed alpha
Helix 79	AI7	C	392	394	Right-handed 310
Helix 80	AI8	C	395	411	Right-handed alpha
Helix 81	AI9	C	412	419	Right-handed alpha
Helix 82	AJ1	C	439	444	Right-handed alpha
Helix 83	AJ2	C	462	468	Right-handed 310
Helix 84	AJ3	C	484	494	Right-handed alpha
Helix 85	AJ4	C	535	541	Right-handed 310
Helix 86	AJ5	C	559	566	Right-handed alpha
Helix 87	AJ6	C	607	612	Right-handed alpha
Helix 88	AJ7	C	629	638	Right-handed 310
Helix 89	AJ8	C	656	661	Right-handed 310
Helix 90	AJ9	C	678	684	Right-handed 310
Helix 91	AK1	C	701	707	Right-handed 310
Helix 92	AK2	C	725	730	Right-handed 310
Helix 93	AK3	C	747	753	Right-handed 310
Helix 94	AK4	C	770	775	Right-handed 310
Helix 95	AK5	C	787	792	Right-handed alpha
Helix 96	AK6	C	795	807	Right-handed alpha
Helix 97	AK7	D	22	50	Right-handed alpha
Helix 98	AK8	D	102	117	Right-handed alpha
Helix 99	AK9	D	119	146	Right-handed alpha
Helix 100	AL1	D	146	166	Right-handed alpha
Helix 101	AL2	D	166	175	Right-handed alpha
Helix 102	AL3	D	233	255	Right-handed alpha
Helix 103	AL4	D	258	286	Right-handed alpha
Helix 104	AL5	D	287	289	Right-handed 310
Helix 105	AL6	D	315	346	Right-handed alpha
Helix 106	AL7	D	353	360	Right-handed alpha
Helix 107	AL8	D	369	383	Right-handed alpha
Helix 108	AL9	D	383	395	Right-handed alpha
Helix 109	AM1	D	395	408	Right-handed alpha
Helix 110	AM2	E	22	50	Right-handed alpha
Helix 111	AM3	E	102	117	Right-handed alpha
Helix 112	AM4	E	119	146	Right-handed alpha
Helix 113	AM5	E	146	165	Right-handed alpha
Helix 114	AM6	E	166	175	Right-handed alpha
Helix 115	AM7	E	233	255	Right-handed alpha
Helix 116	AM8	E	258	286	Right-handed alpha
Helix 117	AM9	E	287	289	Right-handed 310
Helix 118	AN1	E	317	345	Right-handed alpha
Helix 119	AN2	E	353	360	Right-handed alpha
Helix 120	AN3	E	370	383	Right-handed alpha
Helix 121	AN4	E	383	392	Right-handed alpha
Helix 122	AN5	E	395	411	Right-handed alpha
Helix 123	AN6	E	412	420	Right-handed alpha
Helix 124	AN7	E	439	444	Right-handed alpha
Helix 125	AN8	E	462	468	Right-handed 310
Helix 126	AN9	E	484	494	Right-handed alpha
Helix 127	AO1	E	510	514	Right-handed 310
Helix 128	AO2	E	537	541	Right-handed 310
Helix 129	AO3	E	559	566	Right-handed alpha
Helix 130	AO4	E	632	638	Right-handed 310
Helix 131	AO5	E	655	661	Right-handed 310
Helix 132	AO6	E	679	684	Right-handed 310
Helix 133	AO7	E	701	707	Right-handed 310
Helix 134	AO8	E	724	730	Right-handed alpha
Helix 135	AO9	E	747	753	Right-handed 310
Helix 136	AP1	E	771	776	Right-handed alpha
Helix 137	AP2	E	788	793	Right-handed alpha
Helix 138	AP3	E	795	808	Right-handed alpha
Helix 139	AP4	F	22	49	Right-handed alpha
Helix 140	AP5	F	104	119	Right-handed alpha
Helix 141	AP6	F	121	143	Right-handed alpha
Helix 142	AP7	F	143	148	Right-handed alpha
Helix 143	AP8	F	148	168	Right-handed alpha
Helix 144	AP9	F	169	179	Right-handed alpha
Helix 145	AQ1	F	233	253	Right-handed alpha
Helix 146	AQ2	F	256	284	Right-handed alpha
Helix 147	AQ3	F	297	302	Right-handed alpha
Helix 148	AQ4	F	313	343	Right-handed alpha
Helix 149	AQ5	F	351	356	Right-handed alpha
Helix 150	AQ6	F	368	381	Right-handed alpha
Helix 151	AQ7	F	381	389	Right-handed alpha
Helix 152	AQ8	F	390	392	Right-handed 310
Helix 153	AQ9	F	393	409	Right-handed alpha
Helix 154	AR1	F	410	418	Right-handed alpha
Helix 155	AR2	F	437	443	Right-handed alpha
Helix 156	AR3	F	460	466	Right-handed 310
Helix 157	AR4	F	482	492	Right-handed alpha
Helix 158	AR5	F	509	513	Right-handed 310
Helix 159	AR6	F	534	538	Right-handed 310
Helix 160	AR7	F	557	564	Right-handed alpha
Helix 161	AR8	F	582	587	Right-handed alpha
Helix 162	AR9	F	605	611	Right-handed alpha
Helix 163	AS1	F	629	636	Right-handed 310
Helix 164	AS2	F	653	659	Right-handed 310
Helix 165	AS3	F	699	705	Right-handed 310
Helix 166	AS4	F	723	728	Right-handed alpha
Helix 167	AS5	F	745	749	Right-handed 310
Helix 168	AS6	F	768	772	Right-handed 310
Helix 169	AS7	F	785	790	Right-handed alpha
Helix 170	AS8	F	793	802	Right-handed alpha

There are 24 sheets in PDB entry 8F79. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	307	311	anti-parallel
Strand 3	A	292	296	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	F	94	95	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	351	first strand
Strand 2	A	368	369	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	422	first strand
Strand 2	A	428	432	anti-parallel
Strand 3	A	450	453	parallel
Strand 4	A	473	474	parallel
Strand 5	A	497	501	parallel
Strand 6	A	520	524	parallel
Strand 7	A	548	552	parallel
Strand 8	A	571	575	parallel
Strand 9	A	595	599	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	618	620	first strand
Strand 2	A	643	645	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	666	668	first strand
Strand 2	A	689	691	parallel
Strand 3	A	712	714	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	735	737	first strand
Strand 2	A	758	760	parallel
Strand 3	A	784	785	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	307	311	anti-parallel
Strand 3	B	292	296	anti-parallel

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There are 13 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	422	first strand
Strand 2	B	428	433	anti-parallel
Strand 3	B	450	454	parallel
Strand 4	B	473	477	parallel
Strand 5	B	497	501	parallel
Strand 6	B	520	524	parallel
Strand 7	B	548	552	parallel
Strand 8	B	571	575	parallel
Strand 9	B	595	599	parallel
Strand 10	B	618	620	parallel
Strand 11	B	643	645	parallel
Strand 12	B	666	668	parallel
Strand 13	B	689	691	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	736	737	first strand
Strand 2	B	759	760	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	307	311	anti-parallel
Strand 3	C	292	296	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	351	first strand
Strand 2	C	368	369	anti-parallel

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There are 12 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	421	422	first strand
Strand 2	C	428	433	anti-parallel
Strand 3	C	450	454	parallel
Strand 4	C	473	477	parallel
Strand 5	C	497	501	parallel
Strand 6	C	520	524	parallel
Strand 7	C	548	552	parallel
Strand 8	C	571	575	parallel
Strand 9	C	595	599	parallel
Strand 10	C	618	620	parallel
Strand 11	C	643	645	parallel
Strand 12	C	666	668	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	459	461	first strand
Strand 2	C	481	483	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	735	736	first strand
Strand 2	C	758	760	parallel
Strand 3	C	784	785	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	307	311	anti-parallel
Strand 3	D	292	296	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	56	first strand
Strand 2	E	307	311	anti-parallel
Strand 3	E	292	296	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	350	351	first strand
Strand 2	E	368	369	anti-parallel

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There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	421	422	first strand
Strand 2	E	428	433	anti-parallel
Strand 3	E	450	454	parallel
Strand 4	E	473	477	parallel
Strand 5	E	497	501	parallel
Strand 6	E	520	524	parallel
Strand 7	E	548	552	parallel
Strand 8	E	571	575	parallel
Strand 9	E	595	599	parallel
Strand 10	E	618	620	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	459	460	first strand
Strand 2	E	481	482	parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	666	668	first strand
Strand 2	E	689	691	parallel
Strand 3	E	712	714	parallel
Strand 4	E	735	737	parallel
Strand 5	E	758	760	parallel
Strand 6	E	784	785	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	56	first strand
Strand 2	F	306	310	anti-parallel
Strand 3	F	290	293	anti-parallel

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There are 15 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	419	420	first strand
Strand 2	F	426	431	anti-parallel
Strand 3	F	448	452	parallel
Strand 4	F	471	475	parallel
Strand 5	F	495	500	parallel
Strand 6	F	518	523	parallel
Strand 7	F	546	549	parallel
Strand 8	F	569	573	parallel
Strand 9	F	593	597	parallel
Strand 10	F	616	620	parallel
Strand 11	F	641	643	parallel
Strand 12	F	664	666	parallel
Strand 13	F	687	689	parallel
Strand 14	F	710	712	parallel
Strand 15	F	733	735	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	457	458	first strand
Strand 2	F	479	480	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F79

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F79