Analysis of interatomic Contacts of Structural Units in PDB entry:
8F7D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F7D entry

There are 2 chains in PDB entry 8F7D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 402GLU 808
F
 LEU 400ASP 803
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8F7D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
402 411Right-handed alpha
Helix 2
AA2
A
412 420Right-handed alpha
Helix 3
AA3
A
439 445Right-handed alpha
Helix 4
AA4
A
462 468Right-handed 310
Helix 5
AA5
A
484 495Right-handed alpha
Helix 6
AA6
A
509 515Right-handed 310
Helix 7
AA7
A
535 542Right-handed 310
Helix 8
AA8
A
559 566Right-handed alpha
Helix 9
AA9
A
585 589Right-handed 310
Helix 10
AB1
A
633 638Right-handed 310
Helix 11
AB2
A
655 661Right-handed 310
Helix 12
AB3
A
679 684Right-handed 310
Helix 13
AB4
A
701 707Right-handed 310
Helix 14
AB5
A
724 730Right-handed alpha
Helix 15
AB6
A
747 753Right-handed 310
Helix 16
AB7
A
770 776Right-handed 310
Helix 17
AB8
A
787 793Right-handed alpha
Helix 18
AB9
A
795 808Right-handed alpha
Helix 19
AC1
F
401 409Right-handed alpha
Helix 20
AC2
F
410 418Right-handed alpha
Helix 21
AC3
F
437 443Right-handed alpha
Helix 22
AC4
F
460 466Right-handed 310
Helix 23
AC5
F
482 492Right-handed alpha
Helix 24
AC6
F
509 513Right-handed 310
Helix 25
AC7
F
534 538Right-handed 310
Helix 26
AC8
F
557 564Right-handed alpha
Helix 27
AC9
F
582 587Right-handed alpha
Helix 28
AD1
F
605 611Right-handed alpha
Helix 29
AD2
F
629 636Right-handed 310
Helix 30
AD3
F
653 659Right-handed 310
Helix 31
AD4
F
699 705Right-handed 310
Helix 32
AD5
F
723 728Right-handed alpha
Helix 33
AD6
F
745 749Right-handed 310
Helix 34
AD7
F
768 772Right-handed 310
Helix 35
AD8
F
785 790Right-handed alpha
Helix 36
AD9
F
793 802Right-handed alpha
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There are 6 sheets in PDB entry 8F7D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 422first strand
Strand 2
A
428 432anti-parallel
Strand 3
A
450 453parallel
Strand 4
A
473 474parallel
Strand 5
A
497 501parallel
Strand 6
A
520 524parallel
Strand 7
A
548 552parallel
Strand 8
A
571 575parallel
Strand 9
A
595 599parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
618 620first strand
Strand 2
A
643 645parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
666 668first strand
Strand 2
A
689 691parallel
Strand 3
A
712 714parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
735 737first strand
Strand 2
A
758 760parallel
Strand 3
A
784 785parallel
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There are 15 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
419 420first strand
Strand 2
F
426 431anti-parallel
Strand 3
F
448 452parallel
Strand 4
F
471 475parallel
Strand 5
F
495 500parallel
Strand 6
F
518 523parallel
Strand 7
F
546 549parallel
Strand 8
F
569 573parallel
Strand 9
F
593 597parallel
Strand 10
F
616 620parallel
Strand 11
F
641 643parallel
Strand 12
F
664 666parallel
Strand 13
F
687 689parallel
Strand 14
F
710 712parallel
Strand 15
F
733 735parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
457 458first strand
Strand 2
F
479 480parallel
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