Analysis of interatomic Contacts of Structural Units in PDB entry:
8F7E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F7E entry

There are 2 chains in PDB entry 8F7E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 402GLU 808
C
 LEU 402GLU 808
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 8F7E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
402 411Right-handed alpha
Helix 2
AA2
B
412 419Right-handed alpha
Helix 3
AA3
B
439 445Right-handed alpha
Helix 4
AA4
B
462 467Right-handed 310
Helix 5
AA5
B
484 495Right-handed alpha
Helix 6
AA6
B
503 508Right-handed 310
Helix 7
AA7
B
510 515Right-handed alpha
Helix 8
AA8
B
535 543Right-handed 310
Helix 9
AA9
B
559 566Right-handed alpha
Helix 10
AB1
B
567 569Right-handed 310
Helix 11
AB2
B
634 638Right-handed 310
Helix 12
AB3
B
655 661Right-handed 310
Helix 13
AB4
B
679 684Right-handed 310
Helix 14
AB5
B
701 707Right-handed 310
Helix 15
AB6
B
724 730Right-handed alpha
Helix 16
AB7
B
747 752Right-handed alpha
Helix 17
AB8
B
770 774Right-handed 310
Helix 18
AB9
B
787 792Right-handed alpha
Helix 19
AC1
B
795 808Right-handed alpha
Helix 20
AC2
C
403 411Right-handed alpha
Helix 21
AC3
C
412 419Right-handed alpha
Helix 22
AC4
C
439 444Right-handed alpha
Helix 23
AC5
C
462 468Right-handed 310
Helix 24
AC6
C
484 494Right-handed alpha
Helix 25
AC7
C
535 541Right-handed 310
Helix 26
AC8
C
559 566Right-handed alpha
Helix 27
AC9
C
607 612Right-handed alpha
Helix 28
AD1
C
629 638Right-handed 310
Helix 29
AD2
C
656 661Right-handed 310
Helix 30
AD3
C
678 684Right-handed 310
Helix 31
AD4
C
701 707Right-handed 310
Helix 32
AD5
C
725 730Right-handed 310
Helix 33
AD6
C
747 753Right-handed 310
Helix 34
AD7
C
770 775Right-handed 310
Helix 35
AD8
C
787 792Right-handed alpha
Helix 36
AD9
C
795 807Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8F7E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 422first strand
Strand 2
B
428 433anti-parallel
Strand 3
B
450 454parallel
Strand 4
B
473 477parallel
Strand 5
B
497 501parallel
Strand 6
B
520 524parallel
Strand 7
B
548 552parallel
Strand 8
B
571 575parallel
Strand 9
B
595 599parallel
Strand 10
B
618 620parallel
Strand 11
B
643 645parallel
Strand 12
B
666 668parallel
Strand 13
B
689 691parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
736 737first strand
Strand 2
B
759 760parallel
Back to list of sheets
Back to top of page

There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
421 422first strand
Strand 2
C
428 433anti-parallel
Strand 3
C
450 454parallel
Strand 4
C
473 477parallel
Strand 5
C
497 501parallel
Strand 6
C
520 524parallel
Strand 7
C
548 552parallel
Strand 8
C
571 575parallel
Strand 9
C
595 599parallel
Strand 10
C
618 620parallel
Strand 11
C
643 645parallel
Strand 12
C
666 668parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
459 461first strand
Strand 2
C
481 483parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
735 736first strand
Strand 2
C
758 760parallel
Strand 3
C
784 785parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il