Analysis of interatomic Contacts of Structural Units in PDB entry:
8F7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F7F entry

There is 1 chain in PDB entry 8F7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 5ILE 441
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8F7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 7Right-handed 310
Helix 2
AA2
A
16 29Right-handed alpha
Helix 3
AA3
A
48 63Right-handed alpha
Helix 4
AA4
A
64 66Right-handed 310
Helix 5
AA5
A
99 118Right-handed alpha
Helix 6
AA6
A
151 172Right-handed alpha
Helix 7
AA7
A
183 192Right-handed alpha
Helix 8
AA8
A
194 206Right-handed alpha
Helix 9
AA9
A
215 219Right-handed 310
Helix 10
AB1
A
236 250Right-handed alpha
Helix 11
AB2
A
253 271Right-handed alpha
Helix 12
AB3
A
290 294Right-handed 310
Helix 13
AB4
A
313 329Right-handed alpha
Helix 14
AB5
A
330 332Right-handed 310
Helix 15
AB6
A
335 342Right-handed alpha
Helix 16
AB7
A
410 431Right-handed alpha
Helix 17
AB8
A
435 439Right-handed 310
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There are 3 sheets in PDB entry 8F7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 14first strand
Strand 2
A
79 83anti-parallel
Strand 3
A
68 71anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
127 135parallel
Strand 3
A
138 146anti-parallel
Strand 4
A
36 45anti-parallel
Strand 5
A
373 382anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 235first strand
Strand 2
A
398 405anti-parallel
Strand 3
A
388 393anti-parallel
Strand 4
A
352 355parallel
Strand 5
A
274 281parallel
Strand 6
A
300 307anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il