Analysis of interatomic Contacts of Structural Units in PDB entry:
8F7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F7J entry

There is 1 chain in PDB entry 8F7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 LEU 402GLU 808
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8F7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
402 411Right-handed alpha
Helix 2
AA2
E
412 420Right-handed alpha
Helix 3
AA3
E
439 444Right-handed alpha
Helix 4
AA4
E
462 468Right-handed 310
Helix 5
AA5
E
484 494Right-handed alpha
Helix 6
AA6
E
510 514Right-handed 310
Helix 7
AA7
E
537 541Right-handed 310
Helix 8
AA8
E
559 566Right-handed alpha
Helix 9
AA9
E
632 638Right-handed 310
Helix 10
AB1
E
655 661Right-handed 310
Helix 11
AB2
E
679 684Right-handed 310
Helix 12
AB3
E
701 707Right-handed 310
Helix 13
AB4
E
724 730Right-handed alpha
Helix 14
AB5
E
747 753Right-handed 310
Helix 15
AB6
E
771 776Right-handed alpha
Helix 16
AB7
E
788 793Right-handed alpha
Helix 17
AB8
E
795 808Right-handed alpha
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There are 3 sheets in PDB entry 8F7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
421 422first strand
Strand 2
E
428 433anti-parallel
Strand 3
E
450 454parallel
Strand 4
E
473 477parallel
Strand 5
E
497 501parallel
Strand 6
E
520 524parallel
Strand 7
E
548 552parallel
Strand 8
E
571 575parallel
Strand 9
E
595 599parallel
Strand 10
E
618 620parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
459 460first strand
Strand 2
E
481 482parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
666 668first strand
Strand 2
E
689 691parallel
Strand 3
E
712 714parallel
Strand 4
E
735 737parallel
Strand 5
E
758 760parallel
Strand 6
E
784 785parallel
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