Analysis of interatomic Contacts of Structural Units in PDB entry:
8F7S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F7S entry

There are 10 chains in PDB entry 8F7S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	SER 45	CYS 333
P	TYR 1	TYR 1
P	PHE 3	GLY 7
A	THR 4	PHE 354
B	GLU 8	ASN 345
C	ALA 7	GLU 63
D	SER 45	CYS 333
Q	TYR 1	TYR 1
Q	PHE 3	GLY 7
F	PHE 336	PHE 354

There are 39 helices in PDB entry 8F7S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	45	77	Right-handed alpha
Helix 2	AA2	R	82	100	Right-handed alpha
Helix 3	AA3	R	101	112	Right-handed alpha
Helix 4	AA4	R	117	152	Right-handed alpha
Helix 5	AA5	R	152	160	Right-handed alpha
Helix 6	AA6	R	161	186	Right-handed alpha
Helix 7	AA7	R	205	241	Right-handed alpha
Helix 8	AA8	R	242	247	Right-handed 310
Helix 9	AA9	R	249	287	Right-handed alpha
Helix 10	AB1	R	293	322	Right-handed alpha
Helix 11	AB2	R	322	333	Right-handed alpha
Helix 12	AB3	P	2	7	Right-handed alpha
Helix 13	AB4	A	6	32	Right-handed alpha
Helix 14	AB5	A	45	55	Right-handed alpha
Helix 15	AB6	A	207	212	Right-handed alpha
Helix 16	AB7	A	213	217	Right-handed 310
Helix 17	AB8	A	228	231	Right-handed 310
Helix 18	AB9	A	241	255	Right-handed alpha
Helix 19	AC1	A	256	260	Right-handed 310
Helix 20	AC2	A	270	281	Right-handed alpha
Helix 21	AC3	A	295	309	Right-handed alpha
Helix 22	AC4	A	330	352	Right-handed alpha
Helix 23	AC5	B	9	31	Right-handed alpha
Helix 24	AC6	B	34	39	Right-handed alpha
Helix 25	AC7	B	40	42	Right-handed 310
Helix 26	AC8	C	8	24	Right-handed alpha
Helix 27	AC9	C	29	44	Right-handed alpha
Helix 28	AD1	D	46	77	Right-handed alpha
Helix 29	AD2	D	82	100	Right-handed alpha
Helix 30	AD3	D	101	112	Right-handed alpha
Helix 31	AD4	D	117	152	Right-handed alpha
Helix 32	AD5	D	152	160	Right-handed alpha
Helix 33	AD6	D	161	186	Right-handed alpha
Helix 34	AD7	D	205	241	Right-handed alpha
Helix 35	AD8	D	249	287	Right-handed alpha
Helix 36	AD9	D	293	322	Right-handed alpha
Helix 37	AE1	D	322	333	Right-handed alpha
Helix 38	AE2	Q	2	7	Right-handed alpha
Helix 39	AE3	F	337	352	Right-handed alpha

There are 10 sheets in PDB entry 8F7S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	187	192	first strand
Strand 2	R	195	200	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	190	first strand
Strand 2	A	195	200	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	56	first strand
Strand 2	B	341	345	anti-parallel
Strand 3	B	332	336	anti-parallel
Strand 4	B	320	325	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	68	first strand
Strand 2	B	74	79	anti-parallel
Strand 3	B	83	88	anti-parallel
Strand 4	B	93	99	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	110	first strand
Strand 2	B	116	120	anti-parallel
Strand 3	B	126	130	anti-parallel
Strand 4	B	139	144	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	156	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	171	175	anti-parallel
Strand 4	B	180	185	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	197	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	213	217	anti-parallel
Strand 4	B	223	227	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	239	first strand
Strand 2	B	245	250	anti-parallel
Strand 3	B	255	259	anti-parallel
Strand 4	B	264	269	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	283	first strand
Strand 2	B	289	294	anti-parallel
Strand 3	B	299	303	anti-parallel
Strand 4	B	309	313	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	192	first strand
Strand 2	D	195	200	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F7S

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F7S