Analysis of interatomic Contacts of Structural Units in PDB entry:
8F7T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F7T entry

There are 6 chains in PDB entry 8F7T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 522	ASN 660
B	PHE 522	ASN 660
C	ASN 35	ARG 503
D	PHE 522	ASN 660
E	ASN 35	ARG 503
G	ASN 35	ARG 503

There are 39 helices in PDB entry 8F7T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	524	528	Right-handed 310
Helix 2	AA2	A	529	534	Right-handed alpha
Helix 3	AA3	A	537	543	Right-handed alpha
Helix 4	AA4	A	571	595	Right-handed alpha
Helix 5	AA5	A	611	615	Right-handed 310
Helix 6	AA6	A	618	626	Right-handed alpha
Helix 7	AA7	A	627	636	Right-handed alpha
Helix 8	AA8	A	638	658	Right-handed alpha
Helix 9	AA9	B	524	528	Right-handed 310
Helix 10	AB1	B	529	534	Right-handed alpha
Helix 11	AB2	B	537	543	Right-handed alpha
Helix 12	AB3	B	571	595	Right-handed alpha
Helix 13	AB4	B	611	615	Right-handed 310
Helix 14	AB5	B	618	626	Right-handed alpha
Helix 15	AB6	B	627	636	Right-handed alpha
Helix 16	AB7	B	638	658	Right-handed alpha
Helix 17	AB8	C	72	76	Right-handed 310
Helix 18	AB9	C	100	118	Right-handed alpha
Helix 19	AC1	C	335	352	Right-handed alpha
Helix 20	AC2	C	475	481	Right-handed alpha
Helix 21	AC3	C	482	486	Right-handed 310
Helix 22	AC4	D	524	528	Right-handed 310
Helix 23	AC5	D	529	534	Right-handed alpha
Helix 24	AC6	D	537	543	Right-handed alpha
Helix 25	AC7	D	571	595	Right-handed alpha
Helix 26	AC8	D	611	615	Right-handed 310
Helix 27	AC9	D	618	626	Right-handed alpha
Helix 28	AD1	D	628	636	Right-handed alpha
Helix 29	AD2	D	638	658	Right-handed alpha
Helix 30	AD3	E	72	76	Right-handed 310
Helix 31	AD4	E	100	118	Right-handed alpha
Helix 32	AD5	E	335	352	Right-handed alpha
Helix 33	AD6	E	475	481	Right-handed alpha
Helix 34	AD7	E	482	486	Right-handed 310
Helix 35	AD8	G	72	76	Right-handed 310
Helix 36	AD9	G	100	118	Right-handed alpha
Helix 37	AE1	G	335	352	Right-handed alpha
Helix 38	AE2	G	475	481	Right-handed alpha
Helix 39	AE3	G	482	486	Right-handed 310

There are 30 sheets in PDB entry 8F7T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	42	first strand
Strand 2	C	494	499	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	58	first strand
Strand 2	C	77	78	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	88	first strand
Strand 2	C	244	247	anti-parallel
Strand 3	C	225	230	anti-parallel
Strand 4	C	487	490	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	96	first strand
Strand 2	C	238	241	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	159	first strand
Strand 2	C	176	179	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	184	first strand
Strand 2	C	194	195	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	263	first strand
Strand 2	C	443	456	anti-parallel
Strand 3	C	286	300	anti-parallel
Strand 4	C	466	470	first strand
Strand 5	C	359	361	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	276	first strand
Strand 2	C	286	300	anti-parallel
Strand 3	C	443	456	anti-parallel
Strand 4	C	330	334	first strand
Strand 5	C	413	421	anti-parallel
Strand 6	C	382	385	anti-parallel
Strand 7	C	374	377	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	310	first strand
Strand 2	C	316	322	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	423	424	first strand
Strand 2	C	434	435	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	42	first strand
Strand 2	E	494	499	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	58	first strand
Strand 2	E	77	78	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	88	first strand
Strand 2	E	244	247	anti-parallel
Strand 3	E	225	230	anti-parallel
Strand 4	E	487	490	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	96	first strand
Strand 2	E	238	241	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	156	159	first strand
Strand 2	E	176	179	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	184	first strand
Strand 2	E	194	195	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	262	263	first strand
Strand 2	E	443	456	anti-parallel
Strand 3	E	286	300	anti-parallel
Strand 4	E	466	470	first strand
Strand 5	E	359	361	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	274	276	first strand
Strand 2	E	286	300	anti-parallel
Strand 3	E	443	456	anti-parallel
Strand 4	E	330	334	first strand
Strand 5	E	413	421	anti-parallel
Strand 6	E	382	385	anti-parallel
Strand 7	E	374	377	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	310	first strand
Strand 2	E	316	322	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	423	424	first strand
Strand 2	E	434	435	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	42	first strand
Strand 2	G	494	499	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	58	first strand
Strand 2	G	77	78	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	86	88	first strand
Strand 2	G	244	247	anti-parallel
Strand 3	G	225	230	anti-parallel
Strand 4	G	487	490	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	93	96	first strand
Strand 2	G	238	241	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	156	159	first strand
Strand 2	G	176	179	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	183	184	first strand
Strand 2	G	194	195	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	262	263	first strand
Strand 2	G	443	456	anti-parallel
Strand 3	G	286	300	anti-parallel
Strand 4	G	466	470	first strand
Strand 5	G	359	361	parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	274	276	first strand
Strand 2	G	286	300	anti-parallel
Strand 3	G	443	456	anti-parallel
Strand 4	G	330	334	first strand
Strand 5	G	413	421	anti-parallel
Strand 6	G	382	385	anti-parallel
Strand 7	G	374	377	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	304	310	first strand
Strand 2	G	316	322	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	423	424	first strand
Strand 2	G	434	435	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F7T

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F7T