Analysis of interatomic Contacts of Structural Units in PDB entry:
8F7W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F7W entry

There are 6 chains in PDB entry 8F7W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	ALA 57	ARG 342
P	TYR 208	ILE 215
A	GLY 2	PHE 354
B	GLN 6	ASN 340
C	ILE 9	GLU 63
E	VAL 2	LEU 248

There are 29 helices in PDB entry 8F7W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	57	86	Right-handed alpha
Helix 2	AA2	R	92	110	Right-handed alpha
Helix 3	AA3	R	111	122	Right-handed alpha
Helix 4	AA4	R	127	162	Right-handed alpha
Helix 5	AA5	R	162	168	Right-handed alpha
Helix 6	AA6	R	171	196	Right-handed alpha
Helix 7	AA7	R	215	217	Right-handed 310
Helix 8	AA8	R	218	255	Right-handed alpha
Helix 9	AA9	R	262	300	Right-handed alpha
Helix 10	AB1	R	305	331	Right-handed alpha
Helix 11	AB2	R	334	342	Right-handed alpha
Helix 12	AB3	A	6	32	Right-handed alpha
Helix 13	AB4	A	46	55	Right-handed alpha
Helix 14	AB5	A	208	213	Right-handed alpha
Helix 15	AB6	A	214	216	Right-handed 310
Helix 16	AB7	A	228	231	Right-handed 310
Helix 17	AB8	A	241	255	Right-handed alpha
Helix 18	AB9	A	270	279	Right-handed alpha
Helix 19	AC1	A	295	309	Right-handed alpha
Helix 20	AC2	A	330	352	Right-handed alpha
Helix 21	AC3	B	7	25	Right-handed alpha
Helix 22	AC4	B	29	34	Right-handed alpha
Helix 23	AC5	B	35	37	Right-handed 310
Helix 24	AC6	C	10	24	Right-handed alpha
Helix 25	AC7	C	29	44	Right-handed alpha
Helix 26	AC8	C	45	48	Right-handed 310
Helix 27	AC9	E	28	32	Right-handed 310
Helix 28	AD1	E	87	91	Right-handed 310
Helix 29	AD2	E	221	225	Right-handed 310

There are 15 sheets in PDB entry 8F7W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	197	202	first strand
Strand 2	R	207	212	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	190	first strand
Strand 2	A	195	200	anti-parallel
Strand 3	A	34	38	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	165	169	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	220	222	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	118	119	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	45	51	anti-parallel
Strand 3	E	33	39	anti-parallel
Strand 4	E	93	99	anti-parallel
Strand 5	E	115	116	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	143	first strand
Strand 2	E	156	162	anti-parallel
Strand 3	E	212	217	anti-parallel
Strand 4	E	204	208	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	149	first strand
Strand 2	E	244	247	parallel
Strand 3	E	227	232	anti-parallel
Strand 4	E	175	180	anti-parallel
Strand 5	E	186	188	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	190	191	first strand
Strand 2	E	195	196	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F7W

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F7W