Analysis of interatomic Contacts of Structural Units in PDB entry:
8F7Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F7Y entry

There are 3 chains in PDB entry 8F7Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 69	MET 298
B	ALA 29	GLN 255
C	GLY 1	GLN 240

There are 16 helices in PDB entry 8F7Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	75	78	Right-handed 310
Helix 2	AA2	A	79	85	Right-handed alpha
Helix 3	AA3	A	115	123	Right-handed alpha
Helix 4	AA4	A	167	171	Right-handed 310
Helix 5	AA5	A	224	228	Right-handed 310
Helix 6	AA6	B	35	37	Right-handed 310
Helix 7	AA7	B	82	86	Right-handed alpha
Helix 8	AA8	B	89	98	Right-handed alpha
Helix 9	AA9	B	140	144	Right-handed 310
Helix 10	AB1	B	148	153	Right-handed alpha
Helix 11	AB2	B	173	179	Right-handed 310
Helix 12	AB3	C	43	48	Right-handed alpha
Helix 13	AB4	C	62	68	Right-handed 310
Helix 14	AB5	C	92	96	Right-handed 310
Helix 15	AB6	C	97	104	Right-handed alpha
Helix 16	AB7	C	143	148	Right-handed alpha

There are 11 sheets in PDB entry 8F7Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	95	first strand
Strand 2	A	246	262	anti-parallel
Strand 3	A	125	140	anti-parallel
Strand 4	A	187	191	anti-parallel
Strand 5	C	22	23	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	201	first strand
Strand 2	A	125	140	anti-parallel
Strand 3	A	246	262	anti-parallel
Strand 4	C	39	40	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	109	first strand
Strand 2	A	231	236	anti-parallel
Strand 3	A	149	155	anti-parallel
Strand 4	A	177	181	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	191	196	parallel
Strand 3	B	106	111	anti-parallel
Strand 4	B	233	240	anti-parallel
Strand 5	B	64	65	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	191	196	parallel
Strand 3	B	106	111	anti-parallel
Strand 4	B	233	240	anti-parallel
Strand 5	B	69	71	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	78	81	anti-parallel
Strand 3	B	213	224	anti-parallel
Strand 4	B	119	128	anti-parallel
Strand 5	B	181	185	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	103	first strand
Strand 2	B	245	249	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	209	218	anti-parallel
Strand 3	C	69	72	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	209	218	anti-parallel
Strand 3	C	113	120	anti-parallel
Strand 4	C	162	167	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	85	first strand
Strand 2	C	191	201	anti-parallel
Strand 3	C	126	134	anti-parallel
Strand 4	C	151	156	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	177	first strand
Strand 2	C	106	110	anti-parallel
Strand 3	C	223	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F7Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F7Y