Analysis of interatomic Contacts of Structural Units in PDB entry:
8F85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F85 entry

There is 1 chain in PDB entry 8F85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3LEU 165
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8F85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 38Right-handed alpha
Helix 2
AA2
A
46 52Right-handed alpha
Helix 3
AA3
A
53 57Right-handed 310
Helix 4
AA4
A
83 88Right-handed alpha
Helix 5
AA5
A
102 110Right-handed alpha
Helix 6
AA6
A
111 113Right-handed 310
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There are 3 sheets in PDB entry 8F85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
63 67parallel
Strand 3
A
41 45parallel
Strand 4
A
97 99parallel
Strand 5
A
4 11parallel
Strand 6
A
115 122parallel
Strand 7
A
156 164anti-parallel
Strand 8
A
141 145anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
63 67parallel
Strand 3
A
41 45parallel
Strand 4
A
97 99parallel
Strand 5
A
4 11parallel
Strand 6
A
115 122parallel
Strand 7
A
156 164anti-parallel
Strand 8
A
149 150anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
132 133anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il