Analysis of interatomic Contacts of Structural Units in PDB entry:
8F8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F8F entry

There are 4 chains in PDB entry 8F8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 0ALA 196
A
 TYR 198ALA 348
B
 THR 0ALA 196
B
 TYR 198ALA 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8F8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 20Right-handed alpha
Helix 2
AA2
A
21 23Right-handed 310
Helix 3
AA3
A
24 39Right-handed alpha
Helix 4
AA4
A
44 58Right-handed alpha
Helix 5
AA5
A
63 89Right-handed alpha
Helix 6
AA6
A
98 110Right-handed alpha
Helix 7
AA7
A
115 147Right-handed alpha
Helix 8
AA8
A
148 180Right-handed alpha
Helix 9
AA9
A
183 195Right-handed alpha
Helix 10
AB1
A
195 200Right-handed alpha
Helix 11
AB2
A
200 212Right-handed alpha
Helix 12
AB3
A
214 243Right-handed alpha
Helix 13
AB4
A
244 249Right-handed alpha
Helix 14
AB5
A
253 259Right-handed alpha
Helix 15
AB6
A
262 276Right-handed alpha
Helix 16
AB7
A
276 287Right-handed alpha
Helix 17
AB8
A
292 306Right-handed alpha
Helix 18
AB9
A
307 329Right-handed alpha
Helix 19
AC1
A
333 347Right-handed alpha
Helix 20
AC2
B
1 20Right-handed alpha
Helix 21
AC3
B
21 23Right-handed 310
Helix 22
AC4
B
24 39Right-handed alpha
Helix 23
AC5
B
44 58Right-handed alpha
Helix 24
AC6
B
63 89Right-handed alpha
Helix 25
AC7
B
98 110Right-handed alpha
Helix 26
AC8
B
115 147Right-handed alpha
Helix 27
AC9
B
148 179Right-handed alpha
Helix 28
AD1
B
183 195Right-handed alpha
Helix 29
AD2
B
195 200Right-handed alpha
Helix 30
AD3
B
200 212Right-handed alpha
Helix 31
AD4
B
214 243Right-handed alpha
Helix 32
AD5
B
244 249Right-handed alpha
Helix 33
AD6
B
253 259Right-handed alpha
Helix 34
AD7
B
262 276Right-handed alpha
Helix 35
AD8
B
276 287Right-handed alpha
Helix 36
AD9
B
292 306Right-handed alpha
Helix 37
AE1
B
307 329Right-handed alpha
Helix 38
AE2
B
333 348Right-handed alpha
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There are 2 sheets in PDB entry 8F8F. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
96 97anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
96 97anti-parallel
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