Analysis of interatomic Contacts of Structural Units in PDB entry:
8F8O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F8O entry

There are 2 chains in PDB entry 8F8O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3GLN 378
B
 SER 4ALA 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8F8O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 15Right-handed alpha
Helix 2
AA2
A
25 35Right-handed alpha
Helix 3
AA3
A
36 38Right-handed 310
Helix 4
AA4
A
102 120Right-handed alpha
Helix 5
AA5
A
142 153Right-handed alpha
Helix 6
AA6
A
198 202Right-handed 310
Helix 7
AA7
A
204 219Right-handed alpha
Helix 8
AA8
A
265 280Right-handed alpha
Helix 9
AA9
A
300 315Right-handed alpha
Helix 10
AB1
A
328 333Right-handed alpha
Helix 11
AB2
A
334 336Right-handed 310
Helix 12
AB3
A
360 377Right-handed alpha
Helix 13
AB4
B
5 15Right-handed alpha
Helix 14
AB5
B
25 35Right-handed alpha
Helix 15
AB6
B
36 38Right-handed 310
Helix 16
AB7
B
76 80Right-handed 310
Helix 17
AB8
B
102 120Right-handed alpha
Helix 18
AB9
B
142 153Right-handed alpha
Helix 19
AC1
B
198 202Right-handed 310
Helix 20
AC2
B
204 219Right-handed alpha
Helix 21
AC3
B
265 280Right-handed alpha
Helix 22
AC4
B
300 315Right-handed alpha
Helix 23
AC5
B
328 333Right-handed alpha
Helix 24
AC6
B
334 336Right-handed 310
Helix 25
AC7
B
360 377Right-handed alpha
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There are 11 sheets in PDB entry 8F8O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
51 56anti-parallel
Strand 3
A
126 132anti-parallel
Strand 4
A
62 68parallel
Strand 5
A
159 162parallel
Strand 6
A
338 341parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
93 95anti-parallel
Strand 3
A
355 357anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
319 321parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
295 296anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 292first strand
Strand 2
A
181 190anti-parallel
Strand 3
A
251 260anti-parallel
Strand 4
A
232 240anti-parallel
Strand 5
B
232 240anti-parallel
Strand 6
B
251 260anti-parallel
Strand 7
B
181 190anti-parallel
Strand 8
B
284 292anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
247 248anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 43first strand
Strand 2
B
51 56anti-parallel
Strand 3
B
126 132anti-parallel
Strand 4
B
62 68parallel
Strand 5
B
159 162parallel
Strand 6
B
338 341parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 89first strand
Strand 2
B
93 95anti-parallel
Strand 3
B
355 357anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 176first strand
Strand 2
B
319 321parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 179first strand
Strand 2
B
295 296anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 195first strand
Strand 2
B
247 248anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il