Analysis of interatomic Contacts of Structural Units in PDB entry:
8F8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F8U entry

There are 2 chains in PDB entry 8F8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 317
B
 ASP 3ARG 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8F8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 15Right-handed alpha
Helix 2
AA2
A
21 30Right-handed alpha
Helix 3
AA3
A
32 46Right-handed alpha
Helix 4
AA4
A
68 78Right-handed alpha
Helix 5
AA5
A
89 96Right-handed alpha
Helix 6
AA6
A
97 101Right-handed 310
Helix 7
AA7
A
142 147Right-handed 310
Helix 8
AA8
A
148 164Right-handed alpha
Helix 9
AA9
A
226 230Right-handed 310
Helix 10
AB1
A
234 257Right-handed alpha
Helix 11
AB2
A
260 269Right-handed alpha
Helix 12
AB3
B
4 15Right-handed alpha
Helix 13
AB4
B
21 30Right-handed alpha
Helix 14
AB5
B
32 46Right-handed alpha
Helix 15
AB6
B
68 78Right-handed alpha
Helix 16
AB7
B
89 96Right-handed alpha
Helix 17
AB8
B
97 101Right-handed 310
Helix 18
AB9
B
142 146Right-handed 310
Helix 19
AC1
B
148 164Right-handed alpha
Helix 20
AC2
B
234 257Right-handed alpha
Helix 21
AC3
B
260 269Right-handed alpha
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There are 8 sheets in PDB entry 8F8U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
57 59anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
106 109parallel
Strand 3
A
130 139anti-parallel
Strand 4
A
199 208anti-parallel
Strand 5
A
182 192anti-parallel
Strand 6
A
176 179anti-parallel
Strand 7
A
170 172anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
111 112parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 280first strand
Strand 2
A
283 292anti-parallel
Strand 3
A
298 302anti-parallel
Strand 4
A
305 309anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
57 59anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
106 109parallel
Strand 3
B
130 139anti-parallel
Strand 4
B
199 208anti-parallel
Strand 5
B
182 192anti-parallel
Strand 6
B
176 179anti-parallel
Strand 7
B
169 172anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 87first strand
Strand 2
B
111 112parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 309first strand
Strand 2
B
298 302anti-parallel
Strand 3
B
283 292anti-parallel
Strand 4
B
275 280anti-parallel
Strand 5
B
313 316anti-parallel
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