Analysis of interatomic Contacts of Structural Units in PDB entry:
8F8Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F8Z entry

There are 6 chains in PDB entry 8F8Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 0ASN 444
B
 ASN 0VAL 449
E
 ALA 1THR 3
E
 GLN 5ALA 7
F
 ALA 1THR 3
F
 GLN 5ARG 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8F8Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 45Right-handed 310
Helix 2
AA2
A
50 58Right-handed alpha
Helix 3
AA3
A
87 96Right-handed alpha
Helix 4
AA4
A
100 104Right-handed 310
Helix 5
AA5
A
109 113Right-handed 310
Helix 6
AA6
A
114 122Right-handed alpha
Helix 7
AA7
A
145 154Right-handed alpha
Helix 8
AA8
A
174 182Right-handed alpha
Helix 9
AA9
A
200 206Right-handed 310
Helix 10
AB1
A
209 216Right-handed alpha
Helix 11
AB2
A
216 222Right-handed alpha
Helix 12
AB3
A
251 255Right-handed 310
Helix 13
AB4
A
274 287Right-handed alpha
Helix 14
AB5
A
289 293Right-handed 310
Helix 15
AB6
A
294 299Right-handed 310
Helix 16
AB7
A
338 340Right-handed 310
Helix 17
AB8
A
341 356Right-handed alpha
Helix 18
AB9
A
365 388Right-handed alpha
Helix 19
AC1
A
392 410Right-handed alpha
Helix 20
AC2
A
414 419Right-handed alpha
Helix 21
AC3
A
420 422Right-handed 310
Helix 22
AC4
A
427 444Right-handed alpha
Helix 23
AC5
B
41 43Right-handed 310
Helix 24
AC6
B
50 58Right-handed alpha
Helix 25
AC7
B
86 96Right-handed alpha
Helix 26
AC8
B
100 104Right-handed 310
Helix 27
AC9
B
109 113Right-handed 310
Helix 28
AD1
B
114 122Right-handed alpha
Helix 29
AD2
B
145 154Right-handed alpha
Helix 30
AD3
B
174 182Right-handed alpha
Helix 31
AD4
B
200 205Right-handed 310
Helix 32
AD5
B
209 216Right-handed alpha
Helix 33
AD6
B
216 222Right-handed alpha
Helix 34
AD7
B
251 255Right-handed 310
Helix 35
AD8
B
274 287Right-handed alpha
Helix 36
AD9
B
289 293Right-handed 310
Helix 37
AE1
B
294 298Right-handed 310
Helix 38
AE2
B
338 340Right-handed 310
Helix 39
AE3
B
341 356Right-handed alpha
Helix 40
AE4
B
365 388Right-handed alpha
Helix 41
AE5
B
392 411Right-handed alpha
Helix 42
AE6
B
414 419Right-handed alpha
Helix 43
AE7
B
420 422Right-handed 310
Helix 44
AE8
B
427 444Right-handed alpha
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There are 10 sheets in PDB entry 8F8Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 5first strand
Strand 2
B
1 7anti-parallel
Strand 3
B
12 13anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
20 22anti-parallel
Strand 3
E
3 4anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
127 129parallel
Strand 3
A
312 315anti-parallel
Strand 4
A
256 263anti-parallel
Strand 5
A
329 336anti-parallel
Strand 6
A
236 240anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 173first strand
Strand 2
A
158 163anti-parallel
Strand 3
A
190 194anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 249first strand
Strand 2
A
320 325anti-parallel
Strand 3
A
266 271anti-parallel
Strand 4
A
303 307anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
20 23anti-parallel
Strand 3
F
3 4anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 47first strand
Strand 2
B
61 62anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
127 129parallel
Strand 3
B
312 315anti-parallel
Strand 4
B
256 263anti-parallel
Strand 5
B
329 336anti-parallel
Strand 6
B
236 240anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 173first strand
Strand 2
B
158 163anti-parallel
Strand 3
B
190 194anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 249first strand
Strand 2
B
320 325anti-parallel
Strand 3
B
266 271anti-parallel
Strand 4
B
303 307anti-parallel
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