Analysis of interatomic Contacts of Structural Units in PDB entry:
8F9B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F9B entry

There are 4 chains in PDB entry 8F9B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 30	ASN 293
B	MET 30	ASN 293
C	MET 30	GLN 299
D	MET 30	GLN 299

There are 32 helices in PDB entry 8F9B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	60	Right-handed 310
Helix 2	AA2	A	66	80	Right-handed alpha
Helix 3	AA3	A	92	106	Right-handed alpha
Helix 4	AA4	A	136	142	Right-handed alpha
Helix 5	AA5	A	143	152	Right-handed 310
Helix 6	AA6	A	227	240	Right-handed alpha
Helix 7	AA7	A	244	258	Right-handed alpha
Helix 8	AA8	A	266	270	Right-handed 310
Helix 9	AA9	B	56	60	Right-handed 310
Helix 10	AB1	B	66	80	Right-handed alpha
Helix 11	AB2	B	92	106	Right-handed alpha
Helix 12	AB3	B	136	142	Right-handed alpha
Helix 13	AB4	B	143	152	Right-handed 310
Helix 14	AB5	B	227	240	Right-handed alpha
Helix 15	AB6	B	244	258	Right-handed alpha
Helix 16	AB7	B	266	270	Right-handed 310
Helix 17	AB8	C	56	60	Right-handed 310
Helix 18	AB9	C	66	80	Right-handed alpha
Helix 19	AC1	C	92	106	Right-handed alpha
Helix 20	AC2	C	136	142	Right-handed alpha
Helix 21	AC3	C	143	152	Right-handed 310
Helix 22	AC4	C	227	240	Right-handed alpha
Helix 23	AC5	C	244	258	Right-handed alpha
Helix 24	AC6	C	266	270	Right-handed 310
Helix 25	AC7	D	56	60	Right-handed 310
Helix 26	AC8	D	66	80	Right-handed alpha
Helix 27	AC9	D	92	106	Right-handed alpha
Helix 28	AD1	D	136	142	Right-handed alpha
Helix 29	AD2	D	143	152	Right-handed 310
Helix 30	AD3	D	227	240	Right-handed alpha
Helix 31	AD4	D	244	258	Right-handed alpha
Helix 32	AD5	D	266	270	Right-handed 310

There are 9 sheets in PDB entry 8F9B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	89	first strand
Strand 2	A	45	51	parallel
Strand 3	A	114	123	parallel
Strand 4	A	156	163	parallel
Strand 5	A	206	210	parallel
Strand 6	A	277	280	anti-parallel
Strand 7	B	277	280	anti-parallel
Strand 8	B	206	210	anti-parallel
Strand 9	B	156	163	parallel
Strand 10	B	114	123	parallel
Strand 11	B	45	51	parallel
Strand 12	B	83	89	parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	135	first strand
Strand 2	A	126	128	anti-parallel
Strand 3	A	114	123	anti-parallel
Strand 4	A	156	163	parallel
Strand 5	A	206	210	parallel
Strand 6	A	277	280	anti-parallel
Strand 7	B	277	280	anti-parallel
Strand 8	B	206	210	anti-parallel
Strand 9	B	156	163	parallel
Strand 10	B	114	123	parallel
Strand 11	B	126	128	anti-parallel
Strand 12	B	133	135	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	194	first strand
Strand 2	A	217	221	anti-parallel
Strand 3	A	225	226	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	194	first strand
Strand 2	B	217	221	anti-parallel
Strand 3	B	225	226	anti-parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	89	first strand
Strand 2	C	46	51	parallel
Strand 3	C	114	119	parallel
Strand 4	C	156	161	parallel
Strand 5	C	206	210	parallel
Strand 6	C	277	280	anti-parallel
Strand 7	D	277	280	anti-parallel
Strand 8	D	206	210	anti-parallel
Strand 9	D	156	161	parallel
Strand 10	D	114	119	parallel
Strand 11	D	46	51	parallel
Strand 12	D	84	89	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	123	first strand
Strand 2	C	126	128	anti-parallel
Strand 3	C	133	135	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	194	first strand
Strand 2	C	217	221	anti-parallel
Strand 3	C	225	226	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	123	first strand
Strand 2	D	126	128	anti-parallel
Strand 3	D	133	135	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	190	194	first strand
Strand 2	D	217	221	anti-parallel
Strand 3	D	225	226	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F9B

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F9B