Analysis of interatomic Contacts of Structural Units in PDB entry:
8F9P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F9P entry

There is 1 chain in PDB entry 8F9P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 23THR 509
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8F9P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
127 132Right-handed alpha
Helix 2
AA2
A
133 137Right-handed 310
Helix 3
AA3
A
139 146Right-handed alpha
Helix 4
AA4
A
147 151Right-handed 310
Helix 5
AA5
A
181 186Right-handed alpha
Helix 6
AA6
A
194 209Right-handed alpha
Helix 7
AA7
A
223 228Right-handed 310
Helix 8
AA8
A
229 236Right-handed alpha
Helix 9
AA9
A
256 263Right-handed alpha
Helix 10
AB1
A
264 267Right-handed 310
Helix 11
AB2
A
279 283Right-handed 310
Helix 12
AB3
A
286 288Right-handed 310
Helix 13
AB4
A
289 309Right-handed alpha
Helix 14
AB5
A
334 343Right-handed alpha
Helix 15
AB6
A
381 396Right-handed alpha
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There are 6 sheets in PDB entry 8F9P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
47 51anti-parallel
Strand 3
A
82 86anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
107 126parallel
Strand 3
A
212 218parallel
Strand 4
A
153 158parallel
Strand 5
A
173 178anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 75first strand
Strand 2
A
57 64anti-parallel
Strand 3
A
93 104anti-parallel
Strand 4
A
107 126anti-parallel
Strand 5
A
273 277parallel
Strand 6
A
319 322parallel
Strand 7
A
358 361parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 414first strand
Strand 2
A
419 424anti-parallel
Strand 3
A
461 465anti-parallel
Strand 4
A
454 457anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 430first strand
Strand 2
A
492 493anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 451first strand
Strand 2
A
437 443anti-parallel
Strand 3
A
472 478anti-parallel
Strand 4
A
504 507anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il