Analysis of interatomic Contacts of Structural Units in PDB entry:
8F9Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F9Q entry

There are 2 chains in PDB entry 8F9Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 18	THR 512
B	HIS 18	THR 512

There are 30 helices in PDB entry 8F9Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	126	131	Right-handed alpha
Helix 2	AA2	A	132	136	Right-handed 310
Helix 3	AA3	A	138	145	Right-handed alpha
Helix 4	AA4	A	146	150	Right-handed 310
Helix 5	AA5	A	180	185	Right-handed alpha
Helix 6	AA6	A	193	208	Right-handed alpha
Helix 7	AA7	A	222	227	Right-handed alpha
Helix 8	AA8	A	228	235	Right-handed alpha
Helix 9	AA9	A	255	262	Right-handed alpha
Helix 10	AB1	A	263	266	Right-handed 310
Helix 11	AB2	A	278	282	Right-handed 310
Helix 12	AB3	A	285	287	Right-handed 310
Helix 13	AB4	A	288	308	Right-handed alpha
Helix 14	AB5	A	335	344	Right-handed alpha
Helix 15	AB6	A	382	397	Right-handed alpha
Helix 16	AB7	B	126	131	Right-handed alpha
Helix 17	AB8	B	132	136	Right-handed 310
Helix 18	AB9	B	138	145	Right-handed alpha
Helix 19	AC1	B	146	150	Right-handed 310
Helix 20	AC2	B	180	185	Right-handed alpha
Helix 21	AC3	B	193	208	Right-handed alpha
Helix 22	AC4	B	222	227	Right-handed alpha
Helix 23	AC5	B	228	235	Right-handed alpha
Helix 24	AC6	B	255	262	Right-handed alpha
Helix 25	AC7	B	263	266	Right-handed 310
Helix 26	AC8	B	278	282	Right-handed 310
Helix 27	AC9	B	285	287	Right-handed 310
Helix 28	AD1	B	288	308	Right-handed alpha
Helix 29	AD2	B	335	344	Right-handed alpha
Helix 30	AD3	B	382	397	Right-handed alpha

There are 12 sheets in PDB entry 8F9Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	A	46	50	anti-parallel
Strand 3	A	81	85	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	A	106	125	parallel
Strand 3	A	211	215	parallel
Strand 4	A	152	157	parallel
Strand 5	A	172	177	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	74	first strand
Strand 2	A	56	63	anti-parallel
Strand 3	A	92	103	anti-parallel
Strand 4	A	106	125	anti-parallel
Strand 5	A	272	276	parallel
Strand 6	A	318	321	parallel
Strand 7	A	359	362	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	416	first strand
Strand 2	A	421	426	anti-parallel
Strand 3	A	464	468	anti-parallel
Strand 4	A	457	460	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	432	first strand
Strand 2	A	495	496	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	454	first strand
Strand 2	A	440	445	anti-parallel
Strand 3	A	475	481	anti-parallel
Strand 4	A	507	510	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	46	50	anti-parallel
Strand 3	B	81	85	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	B	106	125	parallel
Strand 3	B	211	215	parallel
Strand 4	B	152	157	parallel
Strand 5	B	172	177	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	74	first strand
Strand 2	B	56	63	anti-parallel
Strand 3	B	92	103	anti-parallel
Strand 4	B	106	125	anti-parallel
Strand 5	B	272	276	parallel
Strand 6	B	318	321	parallel
Strand 7	B	359	362	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	416	first strand
Strand 2	B	421	426	anti-parallel
Strand 3	B	464	468	anti-parallel
Strand 4	B	457	460	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	432	first strand
Strand 2	B	495	496	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	454	first strand
Strand 2	B	440	445	anti-parallel
Strand 3	B	475	481	anti-parallel
Strand 4	B	507	510	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F9Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F9Q